Trace number 1825326

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerCPU timeWall clock time
SAT07 reference solver: picosat 535UNSAT 26.202 26.2156

General information on the benchmark

NameAPPLICATIONS/bioinfo/
q_query_2_L324_coli.cnf
MD5SUM501f46d9a7ec80065d0e56530d26e648
Bench CategoryAPPLICATION (applications instances)
Best result obtained on this benchmarkUNSAT
Best CPU time to get the best result obtained on this benchmark3.60645
Satisfiable
(Un)Satisfiability was proved
Number of variables617854
Number of clauses2745225
Sum of the clauses size7889647
Maximum clause length11
Minimum clause length1
Number of clauses of size 163819
Number of clauses of size 2860549
Number of clauses of size 31288709
Number of clauses of size 4426025
Number of clauses of size 5105475
Number of clauses of size over 5648

Solver Data 

26.18/26.20	s UNSATISFIABLE

Verifier Data 

No possible verification on an UNSAT instance

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-1825326-1242497991/watcher-1825326-1242497991 -o /tmp/evaluation-result-1825326-1242497991/solver-1825326-1242497991 -C 10000 -W 12000 -M 1800 --output-limit 1,15 HOME/picosat HOME/instance-1825326-1242497991.cnf 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 10000 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 10030 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 12000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Solver output will be limited to a maximum of 15728640 bytes. The first 1048576 bytes and the last 14680064 bytes will be preserved
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 0.99 0.98 0.99 2/64 26845
/proc/meminfo: memFree=1666608/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=568 CPUtime=0
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 72 0 0 0 0 0 0 0 18 0 1 0 277825534 581632 58 1992294400 134512640 134931368 4294956240 18446744073709551615 134605937 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 142 58 40 102 0 37 0

[startup+0.0821001 s]
/proc/loadavg: 0.99 0.98 0.99 2/64 26845
/proc/meminfo: memFree=1666608/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=1336 CPUtime=0.07
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 245 0 0 0 3 4 0 0 18 0 1 0 277825534 1368064 231 1992294400 134512640 134931368 4294956240 18446744073709551615 134605937 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 334 231 40 102 0 229 0
Current children cumulated CPU time (s) 0.07
Current children cumulated vsize (KiB) 1336

[startup+0.101102 s]
/proc/loadavg: 0.99 0.98 0.99 2/64 26845
/proc/meminfo: memFree=1666608/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=1496 CPUtime=0.09
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 271 0 0 0 4 5 0 0 18 0 1 0 277825534 1531904 257 1992294400 134512640 134931368 4294956240 18446744073709551615 134605937 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 374 257 40 102 0 269 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 1496

[startup+0.30112 s]
/proc/loadavg: 0.99 0.98 0.99 2/64 26845
/proc/meminfo: memFree=1666608/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=3600 CPUtime=0.29
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 709 0 0 0 14 15 0 0 20 0 1 0 277825534 3686400 695 1992294400 134512640 134931368 4294956240 18446744073709551615 134605937 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 900 695 40 102 0 795 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 3600

[startup+0.70116 s]
/proc/loadavg: 0.99 0.98 0.99 2/64 26845
/proc/meminfo: memFree=1666608/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=6968 CPUtime=0.69
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 1212 0 0 0 33 36 0 0 24 0 1 0 277825534 7135232 1198 1992294400 134512640 134931368 4294956240 18446744073709551615 134605937 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 1742 1198 40 102 0 1637 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 6968

[startup+1.50124 s]
/proc/loadavg: 0.99 0.98 0.99 2/65 26846
/proc/meminfo: memFree=1660392/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=9732 CPUtime=1.48
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 2200 0 0 0 69 79 0 0 25 0 1 0 277825534 9965568 2186 1992294400 134512640 134931368 4294956240 18446744073709551615 134605937 0 0 4096 0 0 0 0 17 1 0 0
/proc/26845/statm: 2433 2186 40 102 0 2328 0
Current children cumulated CPU time (s) 1.48
Current children cumulated vsize (KiB) 9732

[startup+3.1014 s]
/proc/loadavg: 0.99 0.98 0.99 2/65 26846
/proc/meminfo: memFree=1653992/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=18964 CPUtime=3.08
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 4173 0 0 0 142 166 0 0 25 0 1 0 277825534 19419136 4159 1992294400 134512640 134931368 4294956240 18446744073709551615 134605937 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 4741 4159 40 102 0 4636 0
Current children cumulated CPU time (s) 3.08
Current children cumulated vsize (KiB) 18964

[startup+6.30171 s]
/proc/loadavg: 0.99 0.98 0.99 2/65 26846
/proc/meminfo: memFree=1639016/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=37952 CPUtime=6.28
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 8218 0 0 0 286 342 0 0 25 0 1 0 277825534 38862848 8204 1992294400 134512640 134931368 4294956240 18446744073709551615 134605937 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 9488 8204 40 102 0 9383 0
Current children cumulated CPU time (s) 6.28
Current children cumulated vsize (KiB) 37952

[startup+12.7014 s]
/proc/loadavg: 0.99 0.98 0.99 2/65 26846
/proc/meminfo: memFree=1605736/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=75928 CPUtime=12.68
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 16326 0 0 0 581 687 0 0 25 0 1 0 277825534 77750272 16312 1992294400 134512640 134931368 4294956240 18446744073709551615 134605937 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 18982 16312 40 102 0 18877 0
Current children cumulated CPU time (s) 12.68
Current children cumulated vsize (KiB) 75928

[startup+25.5016 s]
/proc/loadavg: 0.99 0.98 0.99 2/65 26846
/proc/meminfo: memFree=1553448/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=148496 CPUtime=25.48
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 28542 0 0 0 1337 1211 0 0 25 0 1 0 277825534 152059904 28502 1992294400 134512640 134931368 4294956240 18446744073709551615 134525621 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 37124 28502 42 102 0 37019 0
Current children cumulated CPU time (s) 25.48
Current children cumulated vsize (KiB) 148496

Solver just ended. Dumping a history of the last processes samples

[startup+25.9017 s]
/proc/loadavg: 0.99 0.98 0.99 2/65 26846
/proc/meminfo: memFree=1553448/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=148496 CPUtime=25.88
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 28731 0 0 0 1377 1211 0 0 25 0 1 0 277825534 152059904 28691 1992294400 134512640 134931368 4294956240 18446744073709551615 134524112 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 37124 28691 42 102 0 37019 0
Current children cumulated CPU time (s) 25.88
Current children cumulated vsize (KiB) 148496

[startup+26.1017 s]
/proc/loadavg: 0.99 0.98 0.99 2/65 26846
/proc/meminfo: memFree=1553448/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=148500 CPUtime=26.08
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 28732 0 0 0 1397 1211 0 0 25 0 1 0 277825534 152064000 28692 1992294400 134512640 134931368 4294956240 18446744073709551615 134578944 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 37125 28692 42 102 0 37020 0
Current children cumulated CPU time (s) 26.08
Current children cumulated vsize (KiB) 148500

[startup+26.2017 s]
/proc/loadavg: 0.99 0.98 0.99 2/65 26846
/proc/meminfo: memFree=1553448/2055920 swapFree=4179676/4192956
[pid=26845] ppid=26843 vsize=107396 CPUtime=26.18
/proc/26845/stat : 26845 (picosat) R 26843 26845 26775 0 -1 4194304 28732 0 0 0 1406 1212 0 0 25 0 1 0 277825534 109973504 22164 1992294400 134512640 134931368 4294956240 18446744073709551615 134608241 0 0 4096 0 0 0 0 17 0 0 0
/proc/26845/statm: 26849 21862 42 102 0 26744 0
Current children cumulated CPU time (s) 26.18
Current children cumulated vsize (KiB) 107396

Child status: 20
Real time (s): 26.2156
CPU time (s): 26.202
CPU user time (s): 14.0659
CPU system time (s): 12.1362
CPU usage (%): 99.9483
Max. virtual memory (cumulated for all children) (KiB): 148500

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 14.0659
system time used= 12.1362
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 28734
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2
involuntary context switches= 82

runsolver used 0.025996 second user time and 0.078987 second system time

The end

Launcher Data 

Begin job on node70 at 2009-05-16 20:19:55
IDJOB=1825326
IDBENCH=70966
IDSOLVER=666
FILE ID=node70/1825326-1242497991
PBS_JOBID= 9306974
Free space on /tmp= 66276 MiB

SOLVER NAME= SAT07 reference solver: picosat 535
BENCH NAME= SAT09/APPLICATIONS/bioinfo/q_query_2_L324_coli.cnf
COMMAND LINE= HOME/picosat BENCHNAME            
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-1825326-1242497991/watcher-1825326-1242497991 -o /tmp/evaluation-result-1825326-1242497991/solver-1825326-1242497991 -C 10000 -W 12000 -M 1800 --output-limit 1,15  HOME/picosat HOME/instance-1825326-1242497991.cnf            

TIME LIMIT= 10000 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= 501f46d9a7ec80065d0e56530d26e648
RANDOM SEED=480393397

node70.alineos.net Linux 2.6.9-22.EL.rootsmp #1 SMP Mon Oct 3 08:59:52 CEST 2005

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.213
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5914.62
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.213
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5586.94
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2055920 kB
MemFree:       1667024 kB
Buffers:         40288 kB
Cached:         295268 kB
SwapCached:       7504 kB
Active:         137508 kB
Inactive:       207380 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2055920 kB
LowFree:       1667024 kB
SwapTotal:     4192956 kB
SwapFree:      4179676 kB
Dirty:           54408 kB
Writeback:           0 kB
Mapped:          14048 kB
Slab:            30016 kB
Committed_AS:   943744 kB
PageTables:       1372 kB
VmallocTotal: 536870911 kB
VmallocUsed:    264952 kB
VmallocChunk: 536605679 kB
HugePages_Total:     0
HugePages_Free:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 66276 MiB
End job on node70 at 2009-05-16 20:20:21