Trace number 2665556

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjective functionCPU timeWall clock time
SCIPclp SCIP 1.2.1.2 with Clp 1.11.1 (Release Version) as LP solver? (TO) 1802.18 1802.73

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-nonunif-100_100.14.opb
MD5SUMe81449c340a6e16e28a331cb4252cc2b
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkSAT
Best value of the objective obtained on this benchmark42
Best CPU time to get the best result obtained on this benchmark1800.59
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 42
Optimality of the best value was proved YES
Number of variables23848
Total number of constraints1451912
Number of constraints which are clauses1447776
Number of constraints which are cardinality constraints (but not clauses)4136
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint176
Number of terms in the objective function 176
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 176
Number of bits of the sum of numbers in the objective function 8
Biggest number in a constraint 174
Number of bits of the biggest number in a constraint 8
Biggest sum of numbers in a constraint 350
Number of bits of the biggest sum of numbers9
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data 

0.00/0.00	c SCIP version 1.2.1.2 [precision: 8 byte] [memory: block] [mode: optimized] [LP solver: Clp 1.11.1] [Expressions interpreter: NONE]
0.00/0.00	c Copyright (c) 2002-2010 Konrad-Zuse-Zentrum fuer Informationstechnik Berlin (ZIB)
0.00/0.00	c 
0.00/0.00	c user parameter file <scip.set> not found - using default parameters
0.00/0.00	c reading problem <HOME/instance-2665556-1276623375.opb>
25.38/25.48	c original problem has 23848 variables (23848 bin, 0 int, 0 impl, 0 cont) and 1451912 constraints
25.38/25.48	c problem read
25.38/25.48	c presolving settings loaded
29.59/29.61	c presolving:
43.16/43.29	c (round 1) 12122 del vars, 1322528 del conss, 11680 chg bounds, 168 chg sides, 336 chg coeffs, 0 upgd conss, 2964772 impls, 0 clqs
43.47/43.50	c (round 2) 12134 del vars, 1329256 del conss, 11680 chg bounds, 168 chg sides, 336 chg coeffs, 0 upgd conss, 2964772 impls, 0 clqs
43.57/43.65	c (round 3) 12136 del vars, 1329258 del conss, 11680 chg bounds, 170 chg sides, 340 chg coeffs, 0 upgd conss, 2964880 impls, 0 clqs
45.26/45.35	c (round 4) 12136 del vars, 1329258 del conss, 11680 chg bounds, 170 chg sides, 340 chg coeffs, 122654 upgd conss, 2964880 impls, 0 clqs
55.16/55.24	c    (26.9s) probing: 1000/11712 (8.5%) - 0 fixings, 0 aggregations, 9765 implications, 0 bound changes
65.66/65.76	c    (37.4s) probing: 2000/11712 (17.1%) - 0 fixings, 0 aggregations, 27489 implications, 0 bound changes
65.66/65.77	c    (37.4s) probing: 2001/11712 (17.1%) - 0 fixings, 0 aggregations, 27538 implications, 0 bound changes
65.66/65.77	c    (37.4s) probing aborted: 2000/2000 successive useless probings
65.66/65.77	c presolving (5 rounds):
65.66/65.77	c  12136 deleted vars, 1329258 deleted constraints, 11680 tightened bounds, 0 added holes, 170 changed sides, 340 changed coefficients
65.66/65.77	c  3022484 implications, 0 cliques
65.66/65.77	c presolved problem has 11712 variables (11712 bin, 0 int, 0 impl, 0 cont) and 122654 constraints
65.66/65.77	c  122654 constraints of type <logicor>
65.66/65.77	c transformed objective value is always integral (scale: 1)
65.66/65.77	c Presolving Time: 34.31
65.66/65.77	c - non default parameters ----------------------------------------------------------------------
65.66/65.77	c # SCIP version 1.2.1.2
65.66/65.77	c 
65.66/65.77	c # maximal number of intermediate conflict constraints generated in conflict graph (-1: use every intermediate constraint)
65.66/65.77	c # [type: int, range: [-1,2147483647], default: -1]
65.66/65.77	c conflict/interconss = 0
65.66/65.77	c 
65.66/65.77	c # should binary conflicts be preferred?
65.66/65.77	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
65.66/65.77	c conflict/preferbinary = TRUE
65.66/65.77	c 
65.66/65.77	c # maximum age an unnecessary constraint can reach before it is deleted (0: dynamic, -1: keep all constraints)
65.66/65.77	c # [type: int, range: [-1,2147483647], default: 0]
65.66/65.77	c constraints/agelimit = 1
65.66/65.77	c 
65.66/65.77	c # should enforcement of pseudo solution be disabled?
65.66/65.77	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
65.66/65.77	c constraints/disableenfops = TRUE
65.66/65.77	c 
65.66/65.77	c # frequency for displaying node information lines
65.66/65.77	c # [type: int, range: [-1,2147483647], default: 100]
65.66/65.77	c display/freq = 10000
65.66/65.77	c 
65.66/65.77	c # maximal time in seconds to run
65.66/65.77	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
65.66/65.77	c limits/time = 1774.53
65.66/65.77	c 
65.66/65.77	c # maximal memory usage in MB; reported memory usage is lower than real memory usage!
65.66/65.77	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
65.66/65.77	c limits/memory = 1620
65.66/65.77	c 
65.66/65.77	c # frequency for solving LP at the nodes (-1: never; 0: only root LP)
65.66/65.77	c # [type: int, range: [-1,2147483647], default: 1]
65.66/65.77	c lp/solvefreq = 0
65.66/65.77	c 
65.66/65.77	c # LP pricing strategy ('l'pi default, 'a'uto, 'f'ull pricing, 'p'artial, 's'teepest edge pricing, 'q'uickstart steepest edge pricing, 'd'evex pricing)
65.66/65.77	c # [type: char, range: {lafpsqd}, default: l]
65.66/65.77	c lp/pricing = a
65.66/65.77	c 
65.66/65.77	c # should presolving try to simplify inequalities
65.66/65.77	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
65.66/65.77	c constraints/linear/simplifyinequalities = TRUE
65.66/65.77	c 
65.66/65.77	c # should presolving try to simplify knapsacks
65.66/65.77	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
65.66/65.77	c constraints/knapsack/simplifyinequalities = TRUE
65.66/65.77	c 
65.66/65.77	c # priority of node selection rule <dfs> in standard mode
65.66/65.77	c # [type: int, range: [-536870912,536870911], default: 0]
65.66/65.77	c nodeselection/dfs/stdpriority = 1000000
65.66/65.77	c 
65.66/65.77	c -----------------------------------------------------------------------------------------------
65.66/65.77	c start solving
65.66/65.79	c 
65.76/65.83	o 171
65.76/65.83	c  time | node  | left  |LP iter|LP it/n| mem |mdpt |frac |vars |cons |cols |rows |cuts |confs|strbr|  dualbound   | primalbound  |  gap   
65.76/65.83	c t37.5s|     1 |     0 |     0 |     - | 776M|   0 |   - |  11k| 122k|   0 |   0 |   0 |   0 |   0 |      --      | 1.710000e+02 |    Inf 
66.36/66.41	o 170
66.36/66.41	c b38.0s|     1 |     0 |     0 |     - | 831M|   0 |   - |  11k| 122k|  11k| 122k|   0 |   0 |   0 |      --      | 1.700000e+02 |    Inf 
164.64/164.76	c   135s|     1 |     0 | 21386 |     - | 830M|   0 |  10k|  11k| 122k|  11k| 122k|   0 |   0 |   0 | 9.000000e+00 | 1.700000e+02 |1788.89%
1063.07/1063.44	c  1031s|     1 |     0 | 71572 |     - | 832M|   0 |  10k|  11k| 122k|  11k| 124k|2000 |   0 |   0 | 2.621691e+01 | 1.700000e+02 | 548.44%
1800.06/1800.61	c pressed CTRL-C 1 times (5 times for forcing termination)

Verifier Data 

ERROR: no interpretation found !

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-2665556-1276623375/watcher-2665556-1276623375 -o /tmp/evaluation-result-2665556-1276623375/solver-2665556-1276623375 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt.clp -f HOME/instance-2665556-1276623375.opb -t 1800 -m 1800 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 1.00 1.00 1.00 3/106 10548
/proc/meminfo: memFree=1449184/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=9288 CPUtime=0
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1110 0 0 0 0 0 0 0 18 0 1 0 3630486 9510912 1031 1992294400 4194304 9819077 140736721835136 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10548/statm: 2322 1041 371 1374 0 943 0

[startup+0.0415351 s]
/proc/loadavg: 1.00 1.00 1.00 3/106 10548
/proc/meminfo: memFree=1449184/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=14084 CPUtime=0.03
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 2452 0 0 0 3 0 0 0 18 0 1 0 3630486 14422016 2373 1992294400 4194304 9819077 140736721835136 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10548/statm: 3521 2373 388 1374 0 2142 0
Current children cumulated CPU time (s) 0.03
Current children cumulated vsize (KiB) 14084

[startup+0.100544 s]
/proc/loadavg: 1.00 1.00 1.00 3/106 10548
/proc/meminfo: memFree=1449184/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=19768 CPUtime=0.09
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 3883 0 0 0 9 0 0 0 21 0 1 0 3630486 20242432 3804 1992294400 4194304 9819077 140736721835136 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10548/statm: 4942 3804 388 1374 0 3563 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 19768

[startup+0.300571 s]
/proc/loadavg: 1.00 1.00 1.00 3/106 10548
/proc/meminfo: memFree=1449184/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=24668 CPUtime=0.29
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 5109 0 0 0 28 1 0 0 21 0 1 0 3630486 25260032 5030 1992294400 4194304 9819077 140736721835136 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10548/statm: 6167 5030 388 1374 0 4788 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 24668

[startup+0.700636 s]
/proc/loadavg: 1.00 1.00 1.00 3/106 10548
/proc/meminfo: memFree=1449184/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=32884 CPUtime=0.69
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 7124 0 0 0 67 2 0 0 22 0 1 0 3630486 33673216 7045 1992294400 4194304 9819077 140736721835136 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10548/statm: 8221 7045 388 1374 0 6842 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 32884

[startup+1.50074 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10549
/proc/meminfo: memFree=1418052/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=48852 CPUtime=1.49
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 11143 0 0 0 146 3 0 0 25 0 1 0 3630486 50024448 11064 1992294400 4194304 9819077 140736721835136 18446744073709551615 5902432 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10548/statm: 12213 11064 388 1374 0 10834 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 48852

[startup+3.10197 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10549
/proc/meminfo: memFree=1395360/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=82420 CPUtime=3.1
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 19501 0 0 0 303 7 0 0 25 0 1 0 3630486 84398080 19422 1992294400 4194304 9819077 140736721835136 18446744073709551615 4207135 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10548/statm: 20605 19422 388 1374 0 19226 0
Current children cumulated CPU time (s) 3.1
Current children cumulated vsize (KiB) 82420

[startup+6.30143 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10549
/proc/meminfo: memFree=1326664/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=147656 CPUtime=6.29
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 35776 0 0 0 616 13 0 0 25 0 1 0 3630486 151199744 35697 1992294400 4194304 9819077 140736721835136 18446744073709551615 8610842 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10548/statm: 36914 35697 388 1374 0 35535 0
Current children cumulated CPU time (s) 6.29
Current children cumulated vsize (KiB) 147656

[startup+12.7013 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10549
/proc/meminfo: memFree=1189892/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=282096 CPUtime=12.69
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 69252 0 0 0 1242 27 0 0 25 0 1 0 3630486 288866304 69173 1992294400 4194304 9819077 140736721835136 18446744073709551615 8081516 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10548/statm: 70524 69173 388 1374 0 69145 0
Current children cumulated CPU time (s) 12.69
Current children cumulated vsize (KiB) 282096

[startup+25.5012 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10551
/proc/meminfo: memFree=917712/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=552836 CPUtime=25.48
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 136955 0 0 0 2495 53 0 0 25 0 1 0 3630486 566104064 136522 1992294400 4194304 9819077 140736721835136 18446744073709551615 4700019 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 138209 136522 427 1374 0 136830 0
Current children cumulated CPU time (s) 25.48
Current children cumulated vsize (KiB) 552836

[startup+51.1008 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10551
/proc/meminfo: memFree=507888/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1040948 CPUtime=51.06
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 418657 0 0 0 4774 332 0 0 25 0 1 0 3630486 1065930752 253769 1992294400 4194304 9819077 140736721835136 18446744073709551615 4999837 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 260237 253769 531 1374 0 258858 0
Current children cumulated CPU time (s) 51.06
Current children cumulated vsize (KiB) 1040948

[startup+102.308 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10553
/proc/meminfo: memFree=411044/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1228344 CPUtime=102.25
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 541057 0 0 0 9834 391 0 0 25 0 1 0 3630486 1257824256 278183 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 307086 278183 636 1374 0 305707 0
Current children cumulated CPU time (s) 102.25
Current children cumulated vsize (KiB) 1228344

[startup+162.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10553
/proc/meminfo: memFree=413152/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1229280 CPUtime=162.23
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 609470 0 0 0 15794 429 0 0 25 0 1 0 3630486 1258782720 277680 1992294400 4194304 9819077 140736721835136 18446744073709551615 6198333 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 307320 277680 636 1374 0 305941 0
Current children cumulated CPU time (s) 162.23
Current children cumulated vsize (KiB) 1229280

[startup+222.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10555
/proc/meminfo: memFree=414268/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1233004 CPUtime=222.22
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 663647 0 0 0 21764 458 0 0 25 0 1 0 3630486 1262596096 278065 1992294400 4194304 9819077 140736721835136 18446744073709551615 7293542 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308251 278065 652 1374 0 306872 0
Current children cumulated CPU time (s) 222.22
Current children cumulated vsize (KiB) 1233004

[startup+282.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10557
/proc/meminfo: memFree=399636/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1232968 CPUtime=282.2
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 701436 0 0 0 27739 481 0 0 25 0 1 0 3630486 1262559232 281048 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308242 281048 652 1374 0 306863 0
Current children cumulated CPU time (s) 282.2
Current children cumulated vsize (KiB) 1232968

[startup+342.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10559
/proc/meminfo: memFree=398024/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1233004 CPUtime=342.18
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 737475 0 0 0 33718 500 0 0 25 0 1 0 3630486 1262596096 281410 1992294400 4194304 9819077 140736721835136 18446744073709551615 6191145 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308251 281410 652 1374 0 306872 0
Current children cumulated CPU time (s) 342.18
Current children cumulated vsize (KiB) 1233004

[startup+402.301 s]
/proc/loadavg: 1.07 1.02 1.00 2/107 10561
/proc/meminfo: memFree=408688/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1232940 CPUtime=402.17
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 779978 0 0 0 39695 522 0 0 25 0 1 0 3630486 1262530560 279048 1992294400 4194304 9819077 140736721835136 18446744073709551615 7293496 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308235 279048 652 1374 0 306856 0
Current children cumulated CPU time (s) 402.17
Current children cumulated vsize (KiB) 1232940

[startup+462.301 s]
/proc/loadavg: 1.02 1.01 1.00 2/107 10561
/proc/meminfo: memFree=401496/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1232876 CPUtime=462.15
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 817946 0 0 0 45671 544 0 0 25 0 1 0 3630486 1262465024 280783 1992294400 4194304 9819077 140736721835136 18446744073709551615 6191141 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308219 280783 652 1374 0 306840 0
Current children cumulated CPU time (s) 462.15
Current children cumulated vsize (KiB) 1232876

[startup+522.301 s]
/proc/loadavg: 1.01 1.00 1.00 2/107 10563
/proc/meminfo: memFree=399264/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1232812 CPUtime=522.13
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 854823 0 0 0 51647 566 0 0 25 0 1 0 3630486 1262399488 281130 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308203 281130 652 1374 0 306824 0
Current children cumulated CPU time (s) 522.13
Current children cumulated vsize (KiB) 1232812

[startup+582.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10565
/proc/meminfo: memFree=397528/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1232772 CPUtime=582.11
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 891229 0 0 0 57624 587 0 0 25 0 1 0 3630486 1262358528 281533 1992294400 4194304 9819077 140736721835136 18446744073709551615 7296045 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308193 281533 652 1374 0 306814 0
Current children cumulated CPU time (s) 582.11
Current children cumulated vsize (KiB) 1232772

[startup+642.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10567
/proc/meminfo: memFree=410176/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1232552 CPUtime=642.1
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 933360 0 0 0 63601 609 0 0 25 0 1 0 3630486 1262133248 278333 1992294400 4194304 9819077 140736721835136 18446744073709551615 7312541 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308138 278333 652 1374 0 306759 0
Current children cumulated CPU time (s) 642.1
Current children cumulated vsize (KiB) 1232552

[startup+702.302 s]

################
# More data... #
################

/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1201202 0 0 0 105436 761 0 0 25 0 1 0 3630486 1261744128 278390 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308043 278390 652 1374 0 306664 0
Current children cumulated CPU time (s) 1061.97
Current children cumulated vsize (KiB) 1232172

[startup+1122.3 s]
/proc/loadavg: 1.04 1.03 1.00 2/107 10579
/proc/meminfo: memFree=410672/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1232172 CPUtime=1121.95
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1207558 0 0 0 111426 769 0 0 25 0 1 0 3630486 1261744128 278025 1992294400 4194304 9819077 140736721835136 18446744073709551615 6043636 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308043 278025 652 1374 0 306664 0
Current children cumulated CPU time (s) 1121.95
Current children cumulated vsize (KiB) 1232172

[startup+1182.3 s]
/proc/loadavg: 1.01 1.02 1.00 2/107 10581
/proc/meminfo: memFree=410672/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1232172 CPUtime=1181.93
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1207681 0 0 0 117420 773 0 0 25 0 1 0 3630486 1261744128 278026 1992294400 4194304 9819077 140736721835136 18446744073709551615 6054173 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308043 278026 653 1374 0 306664 0
Current children cumulated CPU time (s) 1181.93
Current children cumulated vsize (KiB) 1232172

[startup+1242.3 s]
/proc/loadavg: 1.00 1.02 1.00 2/107 10583
/proc/meminfo: memFree=410672/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1232172 CPUtime=1241.91
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1207682 0 0 0 123412 779 0 0 25 0 1 0 3630486 1261744128 278027 1992294400 4194304 9819077 140736721835136 18446744073709551615 5721528 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 308043 278027 654 1374 0 306664 0
Current children cumulated CPU time (s) 1241.91
Current children cumulated vsize (KiB) 1232172

[startup+1302.3 s]
/proc/loadavg: 1.00 1.01 1.00 2/107 10585
/proc/meminfo: memFree=385128/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1249956 CPUtime=1301.9
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1229255 0 0 0 129303 887 0 0 25 0 1 0 3630486 1279954944 284519 1992294400 4194304 9819077 140736721835136 18446744073709551615 6198302 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312489 284519 682 1374 0 311110 0
Current children cumulated CPU time (s) 1301.9
Current children cumulated vsize (KiB) 1249956

[startup+1362.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10585
/proc/meminfo: memFree=393188/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1249796 CPUtime=1361.87
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1262826 0 0 0 135280 907 0 0 25 0 1 0 3630486 1279791104 282735 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290952 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312449 282735 682 1374 0 311070 0
Current children cumulated CPU time (s) 1361.87
Current children cumulated vsize (KiB) 1249796

[startup+1422.31 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10587
/proc/meminfo: memFree=394924/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1249576 CPUtime=1421.86
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1297927 0 0 0 141257 929 0 0 25 0 1 0 3630486 1279565824 282056 1992294400 4194304 9819077 140736721835136 18446744073709551615 6198314 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312394 282056 682 1374 0 311015 0
Current children cumulated CPU time (s) 1421.86
Current children cumulated vsize (KiB) 1249576

[startup+1482.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10589
/proc/meminfo: memFree=383888/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1249668 CPUtime=1481.85
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1328084 0 0 0 147238 947 0 0 25 0 1 0 3630486 1279660032 284856 1992294400 4194304 9819077 140736721835136 18446744073709551615 7304779 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312417 284856 682 1374 0 311038 0
Current children cumulated CPU time (s) 1481.85
Current children cumulated vsize (KiB) 1249668

[startup+1542.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10600
/proc/meminfo: memFree=382028/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1249508 CPUtime=1541.82
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1356248 0 0 0 153219 963 0 0 25 0 1 0 3630486 1279496192 285297 1992294400 4194304 9819077 140736721835136 18446744073709551615 6191175 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312377 285297 682 1374 0 310998 0
Current children cumulated CPU time (s) 1541.82
Current children cumulated vsize (KiB) 1249508

[startup+1602.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10602
/proc/meminfo: memFree=391452/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1249412 CPUtime=1601.81
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1390821 0 0 0 159199 982 0 0 25 0 1 0 3630486 1279397888 283285 1992294400 4194304 9819077 140736721835136 18446744073709551615 6191145 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312353 283285 682 1374 0 310974 0
Current children cumulated CPU time (s) 1601.81
Current children cumulated vsize (KiB) 1249412

[startup+1662.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10602
/proc/meminfo: memFree=384384/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1248996 CPUtime=1661.79
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1419715 0 0 0 165180 999 0 0 25 0 1 0 3630486 1278971904 284729 1992294400 4194304 9819077 140736721835136 18446744073709551615 7304801 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312249 284729 682 1374 0 310870 0
Current children cumulated CPU time (s) 1661.79
Current children cumulated vsize (KiB) 1248996

[startup+1722.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10604
/proc/meminfo: memFree=383888/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1249064 CPUtime=1721.77
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1447383 0 0 0 171164 1013 0 0 25 0 1 0 3630486 1279041536 284882 1992294400 4194304 9819077 140736721835136 18446744073709551615 7309084 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312266 284882 682 1374 0 310887 0
Current children cumulated CPU time (s) 1721.77
Current children cumulated vsize (KiB) 1249064

[startup+1782.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10606
/proc/meminfo: memFree=383392/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1248932 CPUtime=1781.75
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1474631 0 0 0 177146 1029 0 0 25 0 1 0 3630486 1278906368 284965 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290944 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312233 284965 682 1374 0 310854 0
Current children cumulated CPU time (s) 1781.75
Current children cumulated vsize (KiB) 1248932



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1800.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10606
/proc/meminfo: memFree=383764/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1248768 CPUtime=1800.06
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1483605 0 0 0 178973 1033 0 0 25 0 1 0 3630486 1278738432 284835 1992294400 4194304 9819077 140736721835136 18446744073709551615 6674427 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312192 284835 682 1374 0 310813 0
Current children cumulated CPU time (s) 1800.06
Current children cumulated vsize (KiB) 1248768

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Sending SIGKILL to process tree (bottom up)

Sending SIGKILL to -10548

Solver just ended. Dumping a history of the last processes samples

[startup+1801.4 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10606
/proc/meminfo: memFree=383764/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1248768 CPUtime=1800.84
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1483660 0 0 0 179051 1033 0 0 25 0 1 0 3630486 1278738432 284890 1992294400 4194304 9819077 140736721835136 18446744073709551615 7309043 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312192 284890 682 1374 0 310813 0
Current children cumulated CPU time (s) 1800.84
Current children cumulated vsize (KiB) 1248768

[startup+1802.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 10607
/proc/meminfo: memFree=383384/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1248768 CPUtime=1801.64
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1483715 0 0 0 179131 1033 0 0 25 0 1 0 3630486 1278738432 284945 1992294400 4194304 9819077 140736721835136 18446744073709551615 6191145 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312192 284945 682 1374 0 310813 0
Current children cumulated CPU time (s) 1801.64
Current children cumulated vsize (KiB) 1248768

[startup+1802.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 10607
/proc/meminfo: memFree=383384/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=1248768 CPUtime=1802.04
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1483745 0 0 0 179171 1033 0 0 25 0 1 0 3630486 1278738432 284975 1992294400 4194304 9819077 140736721835136 18446744073709551615 6192325 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10548/statm: 312192 284975 682 1374 0 310813 0
Current children cumulated CPU time (s) 1802.04
Current children cumulated vsize (KiB) 1248768

[startup+1802.7 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 10607
/proc/meminfo: memFree=383384/2059040 swapFree=4192956/4192956
[pid=10548] ppid=10546 vsize=0 CPUtime=1802.14
/proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4203524 1483747 0 0 0 179173 1041 0 0 25 0 1 0 3630486 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 18446744073709551615 0 0 17 1 0 0 0
/proc/10548/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1802.14
Current children cumulated vsize (KiB) 0

Child ended because it received signal 9 (SIGKILL)
Real time (s): 1802.73
CPU time (s): 1802.18
CPU user time (s): 1791.73
CPU system time (s): 10.4454
CPU usage (%): 99.9696
Max. virtual memory (cumulated for all children) (KiB): 1538116

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1791.73
system time used= 10.4454
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 1483747
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2
involuntary context switches= 21843

runsolver used 2.81757 second user time and 8.68068 second system time

The end

Launcher Data 

Begin job on node039 at 2010-06-15 19:36:17
IDJOB=2665556
IDBENCH=2955
IDSOLVER=1168
FILE ID=node039/2665556-1276623375
PBS_JOBID= 11172326
Free space on /tmp= 62500 MiB

SOLVER NAME= SCIPclp SCIP 1.2.1.2 with Clp 1.11.1 (Release Version) as LP solver
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.14.opb
COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt.clp -f BENCHNAME -t TIMEOUT -m MEMLIMIT
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-2665556-1276623375/watcher-2665556-1276623375 -o /tmp/evaluation-result-2665556-1276623375/solver-2665556-1276623375 -C 1800 -W 2000 -M 1800  HOME/pbscip.linux.x86_64.gnu.opt.clp -f HOME/instance-2665556-1276623375.opb -t 1800 -m 1800

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= e81449c340a6e16e28a331cb4252cc2b
RANDOM SEED=1783417476

node039.alineos.net Linux 2.6.18-164.el5 #1 SMP Thu Sep 3 03:28:30 EDT 2009

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.267
cache size	: 2048 KB
physical id	: 0
siblings	: 1
core id		: 0
cpu cores	: 1
apicid		: 0
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr
bogomips	: 6000.53
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.267
cache size	: 2048 KB
physical id	: 3
siblings	: 1
core id		: 0
cpu cores	: 1
apicid		: 6
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5599.45
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2059040 kB
MemFree:       1449340 kB
Buffers:         76356 kB
Cached:         401616 kB
SwapCached:          0 kB
Active:         252088 kB
Inactive:       285352 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2059040 kB
LowFree:       1449340 kB
SwapTotal:     4192956 kB
SwapFree:      4192956 kB
Dirty:           57768 kB
Writeback:          64 kB
AnonPages:       59412 kB
Mapped:          15404 kB
Slab:            50072 kB
PageTables:       3972 kB
NFS_Unstable:        0 kB
Bounce:              0 kB
CommitLimit:   5222476 kB
Committed_AS:   181532 kB
VmallocTotal: 34359738367 kB
VmallocUsed:    264948 kB
VmallocChunk: 34359471699 kB
HugePages_Total:     0
HugePages_Free:      0
HugePages_Rsvd:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 62496 MiB
End job on node039 at 2010-06-15 20:06:20