Trace number 1869592

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjCPU timeWall clock time
SCIPspx SCIP 1.1.0.7 with SoPLEX 1.4.1(24.4.2009)? (TO) 1802.16 1802.88

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-unif-100_100.08.opb
MD5SUM7e2e59a69914c0aa8f6d18f073e252a7
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkOPT
Best value of the objective obtained on this benchmark34
Best CPU time to get the best result obtained on this benchmark29.2666
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 34
Optimality of the best value was proved YES
Number of variables9457
Total number of constraints449183
Number of constraints which are clauses446880
Number of constraints which are cardinality constraints (but not clauses)2303
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint98
Number of terms in the objective function 98
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 98
Number of bits of the sum of numbers in the objective function 7
Biggest number in a constraint 96
Number of bits of the biggest number in a constraint 7
Biggest sum of numbers in a constraint 194
Number of bits of the biggest sum of numbers8
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data 

6.19/6.24	c SCIP version 1.1.0.7
6.19/6.24	c LP-Solver SoPlex 1.4.1
6.19/6.24	c user parameter file <scip.set> not found - using default parameters
6.19/6.24	c read problem <HOME/instance-1869592-1245180170.opb>
6.19/6.24	c original problem has 9457 variables (9457 bin, 0 int, 0 impl, 0 cont) and 449183 constraints
7.39/7.45	c start presolving problem
7.39/7.45	c presolving:
10.39/10.44	c (round 1) 5406 del vars, 396897 del conss, 5105 chg bounds, 96 chg sides, 192 chg coeffs, 0 upgd conss, 777226 impls, 0 clqs
10.49/10.51	c (round 2) 5407 del vars, 401157 del conss, 5105 chg bounds, 96 chg sides, 192 chg coeffs, 0 upgd conss, 777226 impls, 0 clqs
11.00/11.00	c (round 3) 5407 del vars, 401157 del conss, 5105 chg bounds, 96 chg sides, 192 chg coeffs, 48026 upgd conss, 777226 impls, 0 clqs
15.39/15.45	c    (8.5s) probing: 1000/4050 (24.7%) - 0 fixings, 0 aggregations, 1035 implications, 0 bound changes
20.18/20.28	c    (13.3s) probing: 2000/4050 (49.4%) - 0 fixings, 0 aggregations, 2163 implications, 0 bound changes
20.18/20.29	c    (13.3s) probing: 2001/4050 (49.4%) - 0 fixings, 0 aggregations, 2163 implications, 0 bound changes
20.18/20.29	c    (13.3s) probing aborted: 2000/2000 successive useless probings
20.18/20.29	c presolving (4 rounds):
20.18/20.29	c  5407 deleted vars, 401157 deleted constraints, 5105 tightened bounds, 0 added holes, 96 changed sides, 192 changed coefficients
20.18/20.29	c  787356 implications, 0 cliques
20.18/20.29	c presolved problem has 4050 variables (4050 bin, 0 int, 0 impl, 0 cont) and 48026 constraints
20.18/20.29	c   48026 constraints of type <logicor>
20.18/20.29	c transformed objective value is always integral (scale: 1)
20.18/20.29	c Presolving Time: 12.37
20.18/20.29	c strange?!, PURESAT with obj
20.18/20.29	c -----------------------------------------------------------------------------------------------
20.18/20.29	c # maximal memory usage in MB; reported memory usage is lower than real memory usage!
20.18/20.29	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
20.18/20.29	c limits/memory = c 1620
20.18/20.29	c # maximal time in seconds to run
20.18/20.29	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
20.18/20.29	c limits/time = c 1791
20.18/20.29	c # frequency for displaying node information lines
20.18/20.29	c # [type: int, range: [-1,2147483647], default: 100]
20.18/20.29	c display/freq = c 10000
20.18/20.29	c -----------------------------------------------------------------------------------------------
20.18/20.29	c start solving problem
20.18/20.29	c 
46.08/46.10	c  time | node  | left  |LP iter| mem |mdpt |frac |vars |cons |ccons|cols |rows |cuts |confs|strbr|  dualbound   | primalbound  |  gap   
46.08/46.10	c  39.1s|     1 |     0 |  8268 | 262M|   0 |3694 |4050 |  48k|  48k|4050 |  48k|   0 |   0 |   0 | 7.000000e+00 |      --      |    Inf 
284.08/284.20	c   277s|     1 |     0 | 30522 | 265M|   0 |2933 |4050 |  48k|  48k|4050 |  50k|2000 |   0 |   0 | 1.835921e+01 |      --      |    Inf 
387.83/388.08	c   381s|     1 |     0 | 38926 | 265M|   0 |1855 |4050 |  48k|  48k|4050 |  51k|3422 |   0 |   0 | 2.500000e+01 |      --      |    Inf 
623.04/623.36	c   615s|     1 |     0 | 40630 | 265M|   0 |1967 |4050 |  48k|  48k|4050 |  51k|3632 |   0 |   0 | 2.500000e+01 |      --      |    Inf 
878.34/878.70	c   870s|     1 |     0 | 42436 | 265M|   0 |1727 |4050 |  48k|  48k|4050 |  51k|3638 |   0 |   0 | 2.500000e+01 |      --      |    Inf 
1133.93/1134.49	c  1126s|     1 |     0 | 45764 | 265M|   0 |1628 |4050 |  48k|  48k|4050 |  51k|3648 |   0 |   0 | 2.500000e+01 |      --      |    Inf 
1380.74/1381.32	c  1372s|     1 |     0 | 48312 | 265M|   0 |1678 |4050 |  48k|  48k|4050 |  51k|3680 |   0 |   0 | 2.500000e+01 |      --      |    Inf 
1623.64/1624.31	c  1615s|     1 |     0 | 49583 | 265M|   0 |1649 |4050 |  48k|  48k|4050 |  51k|3692 |   0 |   0 | 2.500000e+01 |      --      |    Inf

Verifier Data 

ERROR: no interpretation found !

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-1869592-1245180170/watcher-1869592-1245180170 -o /tmp/evaluation-result-1869592-1245180170/solver-1869592-1245180170 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt-gcc42.spx -t 1800 -m 1800 -f HOME/instance-1869592-1245180170.opb 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 1.01 1.04 1.00 3/64 5968
/proc/meminfo: memFree=1869248/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=6100 CPUtime=0
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 603 0 0 0 0 0 0 0 18 0 1 0 185614093 6246400 585 1992294400 4194304 7823515 548682068736 18446744073709551615 4402248 0 0 4096 0 0 0 0 17 0 0 0
/proc/5968/statm: 1525 596 325 886 0 635 0

[startup+0.020678 s]
/proc/loadavg: 1.01 1.04 1.00 3/64 5968
/proc/meminfo: memFree=1869248/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=10208 CPUtime=0.01
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 1865 0 0 0 1 0 0 0 18 0 1 0 185614093 10452992 1847 1992294400 4194304 7823515 548682068736 18446744073709551615 4807752 0 0 4096 0 0 0 0 17 0 0 0
/proc/5968/statm: 2552 1847 354 886 0 1662 0
Current children cumulated CPU time (s) 0.01
Current children cumulated vsize (KiB) 10208

[startup+0.101687 s]
/proc/loadavg: 1.01 1.04 1.00 3/64 5968
/proc/meminfo: memFree=1869248/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=16640 CPUtime=0.09
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 3482 0 0 0 9 0 0 0 18 0 1 0 185614093 17039360 3464 1992294400 4194304 7823515 548682068736 18446744073709551615 6830472 0 0 4096 0 0 0 0 17 0 0 0
/proc/5968/statm: 4160 3464 354 886 0 3270 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 16640

[startup+0.301706 s]
/proc/loadavg: 1.01 1.04 1.00 3/64 5968
/proc/meminfo: memFree=1869248/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=21548 CPUtime=0.29
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 4713 0 0 0 28 1 0 0 19 0 1 0 185614093 22065152 4695 1992294400 4194304 7823515 548682068736 18446744073709551615 5542759 0 0 4096 0 0 0 0 17 0 0 0
/proc/5968/statm: 5387 4695 354 886 0 4497 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 21548

[startup+0.701748 s]
/proc/loadavg: 1.01 1.04 1.00 3/64 5968
/proc/meminfo: memFree=1869248/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=31992 CPUtime=0.69
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 7313 0 0 0 67 2 0 0 23 0 1 0 185614093 32759808 7295 1992294400 4194304 7823515 548682068736 18446744073709551615 6908057 0 0 4096 0 0 0 0 17 0 0 0
/proc/5968/statm: 7998 7295 354 886 0 7108 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 31992

[startup+1.50183 s]
/proc/loadavg: 1.01 1.04 1.00 2/65 5969
/proc/meminfo: memFree=1833336/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=51704 CPUtime=1.49
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 12257 0 0 0 144 5 0 0 25 0 1 0 185614093 52944896 12239 1992294400 4194304 7823515 548682068736 18446744073709551615 4649571 0 0 4096 0 0 0 0 17 0 0 0
/proc/5968/statm: 12926 12239 354 886 0 12036 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 51704

[startup+3.10199 s]
/proc/loadavg: 1.01 1.04 1.00 2/65 5969
/proc/meminfo: memFree=1805432/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=93228 CPUtime=3.09
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 22626 0 0 0 299 10 0 0 25 0 1 0 185614093 95465472 22608 1992294400 4194304 7823515 548682068736 18446744073709551615 4608832 0 0 4096 0 0 0 0 17 0 0 0
/proc/5968/statm: 23307 22608 354 886 0 22417 0
Current children cumulated CPU time (s) 3.09
Current children cumulated vsize (KiB) 93228

[startup+6.30132 s]
/proc/loadavg: 1.01 1.04 1.00 2/65 5969
/proc/meminfo: memFree=1718648/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=196664 CPUtime=6.29
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 48696 0 0 0 608 21 0 0 25 0 1 0 185614093 201383936 48324 1992294400 4194304 7823515 548682068736 18446744073709551615 4213322 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 49166 48324 370 886 0 48276 0
Current children cumulated CPU time (s) 6.29
Current children cumulated vsize (KiB) 196664

[startup+12.702 s]
/proc/loadavg: 1.01 1.04 1.00 2/65 5969
/proc/meminfo: memFree=1368320/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=507480 CPUtime=12.69
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127371 0 0 0 1178 91 0 0 25 0 1 0 185614093 519659520 125394 1992294400 4194304 7823515 548682068736 18446744073709551615 4207222 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 126870 125394 448 886 0 125980 0
Current children cumulated CPU time (s) 12.69
Current children cumulated vsize (KiB) 507480

[startup+25.5013 s]
/proc/loadavg: 1.01 1.03 1.00 2/65 5969
/proc/meminfo: memFree=1371648/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=25.48
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127561 0 0 0 2455 93 0 0 25 0 1 0 185614093 515784704 124655 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124655 520 886 0 125034 0
Current children cumulated CPU time (s) 25.48
Current children cumulated vsize (KiB) 503696

[startup+51.1019 s]
/proc/loadavg: 1.00 1.03 1.00 2/65 5969
/proc/meminfo: memFree=1371456/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=51.07
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127572 0 0 0 5012 95 0 0 25 0 1 0 185614093 515784704 124666 1992294400 4194304 7823515 548682068736 18446744073709551615 6208537 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124666 531 886 0 125034 0
Current children cumulated CPU time (s) 51.07
Current children cumulated vsize (KiB) 503696

[startup+102.305 s]
/proc/loadavg: 1.00 1.02 1.00 2/65 5969
/proc/meminfo: memFree=1371456/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=102.25
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127574 0 0 0 10127 98 0 0 25 0 1 0 185614093 515784704 124668 1992294400 4194304 7823515 548682068736 18446744073709551615 6019508 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124668 531 886 0 125034 0
Current children cumulated CPU time (s) 102.25
Current children cumulated vsize (KiB) 503696

[startup+162.301 s]
/proc/loadavg: 1.00 1.02 1.00 2/65 5969
/proc/meminfo: memFree=1371456/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=162.23
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127574 0 0 0 16122 101 0 0 25 0 1 0 185614093 515784704 124668 1992294400 4194304 7823515 548682068736 18446744073709551615 6208544 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124668 531 886 0 125034 0
Current children cumulated CPU time (s) 162.23
Current children cumulated vsize (KiB) 503696

[startup+222.301 s]
/proc/loadavg: 1.00 1.01 1.00 2/65 5969
/proc/meminfo: memFree=1371392/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=222.2
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127629 0 0 0 22114 106 0 0 25 0 1 0 185614093 515784704 124713 1992294400 4194304 7823515 548682068736 18446744073709551615 6263490 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124713 534 886 0 125034 0
Current children cumulated CPU time (s) 222.2
Current children cumulated vsize (KiB) 503696

[startup+282.301 s]
/proc/loadavg: 1.00 1.01 1.00 2/65 5969
/proc/meminfo: memFree=1371328/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=282.18
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127629 0 0 0 28107 111 0 0 25 0 1 0 185614093 515784704 124713 1992294400 4194304 7823515 548682068736 18446744073709551615 6216197 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124713 534 886 0 125034 0
Current children cumulated CPU time (s) 282.18
Current children cumulated vsize (KiB) 503696

[startup+342.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1371328/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=342.16
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127674 0 0 0 34085 131 0 0 25 0 1 0 185614093 515784704 124758 1992294400 4194304 7823515 548682068736 18446744073709551615 6211574 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124758 560 886 0 125034 0
Current children cumulated CPU time (s) 342.16
Current children cumulated vsize (KiB) 503696

[startup+402.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1371264/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=402.13
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127674 0 0 0 40077 136 0 0 25 0 1 0 185614093 515784704 124758 1992294400 4194304 7823515 548682068736 18446744073709551615 4338941 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124758 560 886 0 125034 0
Current children cumulated CPU time (s) 402.13
Current children cumulated vsize (KiB) 503696

[startup+462.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1371200/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=462.1
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127674 0 0 0 46067 143 0 0 25 0 1 0 185614093 515784704 124758 1992294400 4194304 7823515 548682068736 18446744073709551615 4338488 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124758 560 886 0 125034 0
Current children cumulated CPU time (s) 462.1
Current children cumulated vsize (KiB) 503696

[startup+522.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1371136/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=522.08
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127674 0 0 0 52058 150 0 0 25 0 1 0 185614093 515784704 124758 1992294400 4194304 7823515 548682068736 18446744073709551615 6722523 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124758 560 886 0 125034 0
Current children cumulated CPU time (s) 522.08
Current children cumulated vsize (KiB) 503696

[startup+582.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1371136/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=582.06
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127674 0 0 0 58048 158 0 0 25 0 1 0 185614093 515784704 124758 1992294400 4194304 7823515 548682068736 18446744073709551615 6908062 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124758 560 886 0 125034 0
Current children cumulated CPU time (s) 582.06
Current children cumulated vsize (KiB) 503696

[startup+642.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1371136/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=642.04
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 64042 162 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 642.04
Current children cumulated vsize (KiB) 503696

[startup+702.301 s]

################
# More data... #
################

/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 105986 201 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 4272784 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 1061.87
Current children cumulated vsize (KiB) 503696

[startup+1122.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1370880/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=1121.84
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 111978 206 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 1121.84
Current children cumulated vsize (KiB) 503696

[startup+1182.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1370880/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=1181.81
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 117969 212 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 1181.81
Current children cumulated vsize (KiB) 503696

[startup+1242.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1370688/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=1241.79
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 123961 218 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 1241.79
Current children cumulated vsize (KiB) 503696

[startup+1302.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1370688/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=1301.77
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 129953 224 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 5965381 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 1301.77
Current children cumulated vsize (KiB) 503696

[startup+1362.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1370624/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=1361.75
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 135944 231 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 6212317 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 1361.75
Current children cumulated vsize (KiB) 503696

[startup+1422.31 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1370688/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=1421.73
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 141936 237 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 4338488 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 1421.73
Current children cumulated vsize (KiB) 503696

[startup+1482.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1370624/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=1481.69
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 147927 242 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 4338488 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 1481.69
Current children cumulated vsize (KiB) 503696

[startup+1542.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1370624/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=1541.67
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 153919 248 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 6908089 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 1541.67
Current children cumulated vsize (KiB) 503696

[startup+1602.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1370688/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=503696 CPUtime=1601.65
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 127675 0 0 0 159909 256 0 0 25 0 1 0 185614093 515784704 124759 1992294400 4194304 7823515 548682068736 18446744073709551615 5965398 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 125924 124759 560 886 0 125034 0
Current children cumulated CPU time (s) 1601.65
Current children cumulated vsize (KiB) 503696

[startup+1662.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1342400/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=533752 CPUtime=1661.62
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 135226 0 0 0 165889 273 0 0 25 0 1 0 185614093 546562048 131868 1992294400 4194304 7823515 548682068736 18446744073709551615 6208544 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 133438 131868 570 886 0 132548 0
Current children cumulated CPU time (s) 1661.62
Current children cumulated vsize (KiB) 533752

[startup+1722.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5969
/proc/meminfo: memFree=1366784/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=507396 CPUtime=1721.6
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 135264 0 0 0 171881 279 0 0 25 0 1 0 185614093 519573504 125720 1992294400 4194304 7823515 548682068736 18446744073709551615 6266861 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 126849 125720 575 886 0 125959 0
Current children cumulated CPU time (s) 1721.6
Current children cumulated vsize (KiB) 507396

[startup+1782.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5971
/proc/meminfo: memFree=1366584/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=507396 CPUtime=1781.58
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 135264 0 0 0 177876 282 0 0 25 0 1 0 185614093 519573504 125720 1992294400 4194304 7823515 548682068736 18446744073709551615 6180591 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 126849 125720 575 886 0 125959 0
Current children cumulated CPU time (s) 1781.58
Current children cumulated vsize (KiB) 507396



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1800.8 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5971
/proc/meminfo: memFree=1366656/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=507396 CPUtime=1800.08
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 135264 0 0 0 179724 284 0 0 25 0 1 0 185614093 519573504 125720 1992294400 4194304 7823515 548682068736 18446744073709551615 5924484 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 126849 125720 575 886 0 125959 0
Current children cumulated CPU time (s) 1800.08
Current children cumulated vsize (KiB) 507396

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Sending SIGKILL to process tree (bottom up)

Sending SIGKILL to -5968

Solver just ended. Dumping a history of the last processes samples

[startup+1801.4 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 5971
/proc/meminfo: memFree=1366656/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=507396 CPUtime=1800.68
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 135264 0 0 0 179784 284 0 0 25 0 1 0 185614093 519573504 125720 1992294400 4194304 7823515 548682068736 18446744073709551615 6212306 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 126849 125720 575 886 0 125959 0
Current children cumulated CPU time (s) 1800.68
Current children cumulated vsize (KiB) 507396

[startup+1802.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 5972
/proc/meminfo: memFree=1366648/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=507396 CPUtime=1801.48
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 135264 0 0 0 179864 284 0 0 25 0 1 0 185614093 519573504 125720 1992294400 4194304 7823515 548682068736 18446744073709551615 6212404 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 126849 125720 575 886 0 125959 0
Current children cumulated CPU time (s) 1801.48
Current children cumulated vsize (KiB) 507396

[startup+1802.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 5972
/proc/meminfo: memFree=1366648/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=507396 CPUtime=1801.88
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 135264 0 0 0 179904 284 0 0 25 0 1 0 185614093 519573504 125720 1992294400 4194304 7823515 548682068736 18446744073709551615 6206177 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 126849 125720 575 886 0 125959 0
Current children cumulated CPU time (s) 1801.88
Current children cumulated vsize (KiB) 507396

[startup+1802.8 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 5972
/proc/meminfo: memFree=1366648/2055920 swapFree=4192812/4192956
[pid=5968] ppid=5966 vsize=507396 CPUtime=1802.08
/proc/5968/stat : 5968 (pbscip.linux.x8) R 5966 5968 5825 0 -1 4194304 135264 0 0 0 179924 284 0 0 25 0 1 0 185614093 519573504 125720 1992294400 4194304 7823515 548682068736 18446744073709551615 6150550 0 0 4096 16384 0 0 0 17 0 0 0
/proc/5968/statm: 126849 125720 575 886 0 125959 0
Current children cumulated CPU time (s) 1802.08
Current children cumulated vsize (KiB) 507396

Child ended because it received signal 9 (SIGKILL)
Real time (s): 1802.88
CPU time (s): 1802.16
CPU user time (s): 1799.25
CPU system time (s): 2.91456
CPU usage (%): 99.9601
Max. virtual memory (cumulated for all children) (KiB): 533752

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1799.25
system time used= 2.91456
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 135264
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2
involuntary context switches= 5854

runsolver used 1.86172 second user time and 4.70528 second system time

The end

Launcher Data 

Begin job on node45 at 2009-06-16 21:22:51
IDJOB=1869592
IDBENCH=2951
IDSOLVER=683
FILE ID=node45/1869592-1245180170
PBS_JOBID= 9363928
Free space on /tmp= 66160 MiB

SOLVER NAME= SCIPspx SCIP 1.1.0.7 with SoPLEX 1.4.1(24.4.2009)
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-unif-100_100.08.opb
COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt-gcc42.spx -t TIMEOUT -m MEMLIMIT -f BENCHNAME
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-1869592-1245180170/watcher-1869592-1245180170 -o /tmp/evaluation-result-1869592-1245180170/solver-1869592-1245180170 -C 1800 -W 2000 -M 1800  HOME/pbscip.linux.x86_64.gnu.opt-gcc42.spx -t 1800 -m 1800 -f HOME/instance-1869592-1245180170.opb

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= 7e2e59a69914c0aa8f6d18f073e252a7
RANDOM SEED=1903598717

node45.alineos.net Linux 2.6.9-22.EL.rootsmp #1 SMP Mon Oct 3 08:59:52 CEST 2005

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.240
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5914.62
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.240
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5586.94
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2055920 kB
MemFree:       1869600 kB
Buffers:         38416 kB
Cached:          84252 kB
SwapCached:        140 kB
Active:          79792 kB
Inactive:        56956 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2055920 kB
LowFree:       1869600 kB
SwapTotal:     4192956 kB
SwapFree:      4192812 kB
Dirty:           24720 kB
Writeback:           0 kB
Mapped:          23756 kB
Slab:            35532 kB
Committed_AS:   159572 kB
PageTables:       1380 kB
VmallocTotal: 536870911 kB
VmallocUsed:    264952 kB
VmallocChunk: 536605679 kB
HugePages_Total:     0
HugePages_Free:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 66148 MiB
End job on node45 at 2009-06-16 21:52:54