Trace number 355236

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds, and are wall clock time (not CPU time).

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerObjective functionCPU timeWall clock time
glpPB 0.2? (TO) 1800.23 1800.77

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-nonunif-100_100.14.opb
MD5SUMe81449c340a6e16e28a331cb4252cc2b
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkOPT
Best value of the objective obtained on this benchmark42
Best CPU time to get the best result obtained on this benchmark131.899
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 42
Optimality of the best value was proved YES
Number of variables23848
Total number of constraints1451912
Number of constraints which are clauses1447776
Number of constraints which are cardinality constraints (but not clauses)4136
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint176
Number of terms in the objective function 176
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 176
Number of bits of the sum of numbers in the objective function 8
Biggest number in a constraint 174
Number of bits of the biggest number in a constraint 8
Biggest sum of numbers in a constraint 350
Number of bits of the biggest sum of numbers9
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data (download as text)

0.00/0.00	c glpPB 0.2 (July 2006)
0.00/0.00	c An Application of GLPK 4.10 for PB Constraints
0.00/0.00	c Done @ University of Michigan, Ann Arbor, MI
0.00/0.00	c  by Hossein Sheini

Verifier Data (download as text)

ERROR: no interpretation found !

Conversion Script Data (download as text)

/tmp/evaluation/355236-1176787032/instance-355236-1176787032.opb is already a linear file

Watcher Data (download as text)

runsolver version 3.2.2 (c) roussel@cril.univ-artois.fr

command line: runsolver --timestamp -w ROOT/results/node26/watcher-355236-1176787032 -o ROOT/results/node26/solver-355236-1176787032 -C 1800 -W 3600 -M 1800 --output-limit 1,15 glpPBv3 /tmp/evaluation/355236-1176787032/instance-355236-1176787032.opb 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 3600 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Solver output will be limited to a maximum of 15728640 bytes. The first 1048576 bytes and the last 14680064 bytes will be preserved
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 1.00 1.02 1.00 3/77 7544
/proc/meminfo: memFree=1677960/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=2648 CPUtime=0
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 268 0 0 0 0 0 0 0 18 0 1 0 126620096 2711552 238 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 13057751 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 662 240 199 40 0 77 0

[startup+0.0204429 s]
/proc/loadavg: 1.00 1.02 1.00 3/77 7544
/proc/meminfo: memFree=1677960/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=3048 CPUtime=0.01
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 387 0 0 0 1 0 0 0 18 0 1 0 126620096 3121152 357 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 13057751 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 762 357 199 40 0 177 0
Current children cumulated CPU time (s) 0.01
Current children cumulated vsize (KiB) 3048

[startup+0.101452 s]
/proc/loadavg: 1.00 1.02 1.00 3/77 7544
/proc/meminfo: memFree=1677960/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=4512 CPUtime=0.09
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 732 0 0 0 9 0 0 0 18 0 1 0 126620096 4620288 702 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 13057751 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 1128 702 199 40 0 543 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 4512

[startup+0.301471 s]
/proc/loadavg: 1.00 1.02 1.00 3/77 7544
/proc/meminfo: memFree=1677960/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=6644 CPUtime=0.29
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1255 0 0 0 29 0 0 0 19 0 1 0 126620096 6803456 1225 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 13057751 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 1661 1225 199 40 0 1076 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 6644

[startup+0.701508 s]
/proc/loadavg: 1.00 1.02 1.00 3/77 7544
/proc/meminfo: memFree=1677960/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=10776 CPUtime=0.69
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 2309 0 0 0 68 1 0 0 23 0 1 0 126620096 11034624 2279 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 13057751 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 2694 2279 199 40 0 2109 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 10776

[startup+1.50158 s]
/proc/loadavg: 1.00 1.02 1.00 2/78 7545
/proc/meminfo: memFree=1666368/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=19168 CPUtime=1.49
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 4386 0 0 0 147 2 0 0 25 0 1 0 126620096 19628032 4356 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 13057751 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 4792 4356 199 40 0 4207 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 19168

[startup+3.10173 s]
/proc/loadavg: 1.00 1.02 1.00 2/78 7545
/proc/meminfo: memFree=1654912/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=34488 CPUtime=3.01
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 8241 0 0 0 296 5 0 0 22 0 1 0 126620096 35315712 8211 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 13057751 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 8622 8211 199 40 0 8037 0
Current children cumulated CPU time (s) 3.01
Current children cumulated vsize (KiB) 34488

[startup+6.30103 s]
/proc/loadavg: 1.00 1.02 1.00 2/78 7545
/proc/meminfo: memFree=1623552/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=66056 CPUtime=6.21
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 16136 0 0 0 610 11 0 0 25 0 1 0 126620096 67641344 16106 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 13057751 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 16514 16106 199 40 0 15929 0
Current children cumulated CPU time (s) 6.21
Current children cumulated vsize (KiB) 66056

[startup+12.7016 s]
/proc/loadavg: 1.00 1.02 1.00 2/78 7545
/proc/meminfo: memFree=1560512/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=126800 CPUtime=12.61
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 31314 0 0 0 1241 20 0 0 25 0 1 0 126620096 129843200 31284 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 13057751 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 31700 31284 199 40 0 31115 0
Current children cumulated CPU time (s) 12.61
Current children cumulated vsize (KiB) 126800

[startup+25.5018 s]
/proc/loadavg: 1.00 1.02 1.00 2/78 7545
/proc/meminfo: memFree=1184448/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=495728 CPUtime=25.41
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 133782 0 0 0 2478 63 0 0 25 0 1 0 126620096 507625472 123522 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134551221 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 123932 123522 204 40 0 123347 0
Current children cumulated CPU time (s) 25.41
Current children cumulated vsize (KiB) 495728

[startup+51.1012 s]
/proc/loadavg: 1.00 1.02 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=50.98
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 333022 0 0 0 4943 155 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134582412 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 50.98
Current children cumulated vsize (KiB) 1048048

[startup+102.306 s]
/proc/loadavg: 1.00 1.01 1.00 2/78 7545
/proc/meminfo: memFree=630848/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=102.17
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 367054 0 0 0 10044 173 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134584095 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 102.17
Current children cumulated vsize (KiB) 1048048

[startup+162.302 s]
/proc/loadavg: 1.00 1.01 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=162.16
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 412430 0 0 0 16019 197 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134582110 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 162.16
Current children cumulated vsize (KiB) 1048048

[startup+222.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7545
/proc/meminfo: memFree=630720/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=222.14
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 457806 0 0 0 21994 220 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134643553 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 222.14
Current children cumulated vsize (KiB) 1048048

[startup+282.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=282.13
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 503182 0 0 0 27969 244 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134643494 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 282.13
Current children cumulated vsize (KiB) 1048048

[startup+342.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=342.11
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 548558 0 0 0 33945 266 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134582412 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 342.11
Current children cumulated vsize (KiB) 1048048

[startup+402.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7545
/proc/meminfo: memFree=630720/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=402.09
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 593934 0 0 0 39920 289 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134643494 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 402.09
Current children cumulated vsize (KiB) 1048048

[startup+462.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=462.09
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 639310 0 0 0 45896 313 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134606867 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 462.09
Current children cumulated vsize (KiB) 1048048

[startup+522.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=522.07
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 684686 0 0 0 51871 336 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134583896 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 522.07
Current children cumulated vsize (KiB) 1048048

[startup+582.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7545
/proc/meminfo: memFree=585600/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1093424 CPUtime=582.06
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 730062 0 0 0 57847 359 0 0 25 0 1 0 126620096 1119666176 272963 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134638778 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 273356 272963 221 40 0 272771 0
Current children cumulated CPU time (s) 582.06
Current children cumulated vsize (KiB) 1093424

[startup+642.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=642.04
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 764094 0 0 0 63828 376 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134643569 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 642.04
Current children cumulated vsize (KiB) 1048048


################
# More data... #
################

[startup+882.302 s]
/proc/loadavg: 1.02 1.03 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=881.98
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 934254 0 0 0 87735 463 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134605662 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 881.98
Current children cumulated vsize (KiB) 1048048

[startup+942.301 s]
/proc/loadavg: 1.01 1.02 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=941.97
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 979630 0 0 0 93709 488 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134583726 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 941.97
Current children cumulated vsize (KiB) 1048048

[startup+1002.3 s]
/proc/loadavg: 1.00 1.02 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1001.95
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1025006 0 0 0 99684 511 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134582110 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1001.95
Current children cumulated vsize (KiB) 1048048

[startup+1062.3 s]
/proc/loadavg: 1.00 1.01 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1061.93
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1070382 0 0 0 105659 534 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134583707 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1061.93
Current children cumulated vsize (KiB) 1048048

[startup+1122.3 s]
/proc/loadavg: 1.00 1.01 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1121.92
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1104414 0 0 0 111640 552 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134643494 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1121.92
Current children cumulated vsize (KiB) 1048048

[startup+1182.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7545
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1181.91
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1149790 0 0 0 117614 577 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134589599 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1181.91
Current children cumulated vsize (KiB) 1048048

[startup+1242.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=585600/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1241.89
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1195166 0 0 0 123589 600 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134582412 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1241.89
Current children cumulated vsize (KiB) 1048048

[startup+1302.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1301.88
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1229198 0 0 0 129570 618 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134582295 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1301.88
Current children cumulated vsize (KiB) 1048048

[startup+1362.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=630720/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1361.86
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1274574 0 0 0 135545 641 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134643286 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1361.86
Current children cumulated vsize (KiB) 1048048

[startup+1422.31 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=585600/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1093424 CPUtime=1421.85
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1319950 0 0 0 141521 664 0 0 25 0 1 0 126620096 1119666176 272963 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134639290 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 273356 272963 221 40 0 272771 0
Current children cumulated CPU time (s) 1421.85
Current children cumulated vsize (KiB) 1093424

[startup+1482.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1481.83
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1353982 0 0 0 147501 682 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134643521 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1481.83
Current children cumulated vsize (KiB) 1048048

[startup+1542.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1541.82
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1399358 0 0 0 153477 705 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134590206 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1541.82
Current children cumulated vsize (KiB) 1048048

[startup+1602.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1601.8
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1433390 0 0 0 159458 722 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134643691 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1601.8
Current children cumulated vsize (KiB) 1048048

[startup+1662.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1661.79
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1478766 0 0 0 165434 745 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134582906 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1661.79
Current children cumulated vsize (KiB) 1048048

[startup+1722.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=630720/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1721.77
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1524142 0 0 0 171408 769 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134583600 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1721.77
Current children cumulated vsize (KiB) 1048048

[startup+1782.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1781.75
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1558174 0 0 0 177389 786 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134643172 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1781.75
Current children cumulated vsize (KiB) 1048048



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1800.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=1048048 CPUtime=1800.06
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 0 1569518 0 0 0 179214 792 0 0 25 0 1 0 126620096 1073201152 261619 18446744073709551615 134512640 134678228 4294956672 18446744073709551615 134643580 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 262012 261619 221 40 0 261427 0
Current children cumulated CPU time (s) 1800.06
Current children cumulated vsize (KiB) 1048048

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Solver just ended. Dumping a history of the last processes samples

[startup+1800.71 s]
/proc/loadavg: 1.00 1.00 1.00 2/78 7547
/proc/meminfo: memFree=630784/2055920 swapFree=4170260/4192956
[pid=7544] ppid=7542 vsize=0 CPUtime=1800.16
/proc/7544/stat : 7544 (glpPBv3) R 7542 7544 6831 0 -1 1028 1569518 0 0 0 179214 802 0 0 25 0 1 0 126620096 0 0 18446744073709551615 0 0 0 0 0 0 0 4096 0 0 0 0 17 1 0 0
/proc/7544/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1800.16
Current children cumulated vsize (KiB) 0

Child ended because it received signal 15 (SIGTERM)
Real time (s): 1800.77
CPU time (s): 1800.23
CPU user time (s): 1792.15
CPU system time (s): 8.08177
CPU usage (%): 99.9701
Max. virtual memory (cumulated for all children) (KiB): 1093424

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1792.15
system time used= 8.08177
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 1569518
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 12
involuntary context switches= 23763

runsolver used 2.10768 second user time and 4.39133 second system time

The end

Launcher Data (download as text)

Begin job on node26 on Tue Apr 17 05:17:13 UTC 2007

IDJOB= 355236
IDBENCH= 2955
IDSOLVER= 166
FILE ID= node26/355236-1176787032

PBS_JOBID= 4580821

Free space on /tmp= 66471 MiB

SOLVER NAME= glpPB 0.2
BENCH NAME= HOME/pub/bench/PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.14.opb
COMMAND LINE= glpPBv3 /tmp/evaluation/355236-1176787032/instance-355236-1176787032.opb
CONVERSION COMMAND LINE= runsolver -w ROOT/results/node26/convwatcher-355236-1176787032 -o ROOT/results/node26/conversion-355236-1176787032 -C 600 -M 1800 PBconversionToLinear /tmp/evaluation/355236-1176787032/instance-355236-1176787032.opb
CONVERSION RUNSOLVER STATUS CODE= 0
CONVERSION STATUS CODE= 0

RUNSOLVER COMMAND LINE= runsolver  --timestamp  -w ROOT/results/node26/watcher-355236-1176787032 -o ROOT/results/node26/solver-355236-1176787032 -C 1800 -W 3600 -M 1800 --output-limit 1,15  glpPBv3 /tmp/evaluation/355236-1176787032/instance-355236-1176787032.opb

META MD5SUM SOLVER= 9ebec3e8d890fdeefad01654ad9b68b7
MD5SUM BENCH=  e81449c340a6e16e28a331cb4252cc2b

RANDOM SEED= 972957193

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB

Linux node26.alineos.net 2.6.9-22.EL.rootsmp #1 SMP Mon Oct 3 08:59:52 CEST 2005 x86_64 x86_64 x86_64 GNU/Linux

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.213
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5914.62
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.213
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5586.94
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2055920 kB
MemFree:       1678304 kB
Buffers:         35812 kB
Cached:         262588 kB
SwapCached:       3384 kB
Active:         183524 kB
Inactive:       138292 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2055920 kB
LowFree:       1678304 kB
SwapTotal:     4192956 kB
SwapFree:      4170260 kB
Dirty:           53884 kB
Writeback:           0 kB
Mapped:          30760 kB
Slab:            41360 kB
Committed_AS:   957848 kB
PageTables:       1716 kB
VmallocTotal: 536870911 kB
VmallocUsed:    264952 kB
VmallocChunk: 536605679 kB
HugePages_Total:     0
HugePages_Free:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 66471 MiB

End job on node26 on Tue Apr 17 05:47:16 UTC 2007