Trace number 2667117

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjective functionCPU timeWall clock time
SCIPspx SCIP 1.2.1.2 with SoPlex 1.4.2 (CVS Version 30.5.2010) as LP solver? (TO) 1802.2 1802.72

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-nonunif-100_100.11.opb
MD5SUM5f844d3fbd9d157e56bab6c09ee5f179
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkSAT
Best value of the objective obtained on this benchmark38
Best CPU time to get the best result obtained on this benchmark1800.48
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 38
Optimality of the best value was proved YES
Number of variables21675
Total number of constraints1210400
Number of constraints which are clauses1206830
Number of constraints which are cardinality constraints (but not clauses)3570
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint170
Number of terms in the objective function 170
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 170
Number of bits of the sum of numbers in the objective function 8
Biggest number in a constraint 168
Number of bits of the biggest number in a constraint 8
Biggest sum of numbers in a constraint 338
Number of bits of the biggest sum of numbers9
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data 

0.00/0.00	c SCIP version 1.2.1.2 [precision: 8 byte] [memory: block] [mode: optimized] [LP solver: SoPlex 1.4.2] [Expressions interpreter: NONE]
0.00/0.00	c Copyright (c) 2002-2010 Konrad-Zuse-Zentrum fuer Informationstechnik Berlin (ZIB)
0.00/0.00	c 
0.00/0.00	c user parameter file <scip.set> not found - using default parameters
0.00/0.00	c reading problem <HOME/instance-2667117-1276622692.opb>
21.29/21.32	c original problem has 21675 variables (21675 bin, 0 int, 0 impl, 0 cont) and 1210400 constraints
21.29/21.32	c problem read
21.29/21.33	c presolving settings loaded
24.78/24.84	c presolving:
36.29/36.36	c (round 1) 10229 del vars, 1090739 del conss, 9827 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2971827 impls, 0 clqs
36.48/36.57	c (round 2) 10233 del vars, 1099536 del conss, 9827 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2971827 impls, 0 clqs
38.08/38.19	c (round 3) 10233 del vars, 1099536 del conss, 9827 chg bounds, 162 chg sides, 324 chg coeffs, 110864 upgd conss, 2971827 impls, 0 clqs
39.39/39.49	c    (15.8s) probing: 161/11442 (1.4%) - 0 fixings, 0 aggregations, 6 implications, 0 bound changes
39.39/39.49	c    (15.8s) probing aborted: 100/100 successive totally useless probings
39.39/39.49	c presolving (4 rounds):
39.39/39.49	c  10233 deleted vars, 1099536 deleted constraints, 9827 tightened bounds, 0 added holes, 162 changed sides, 324 changed coefficients
39.39/39.49	c  2971839 implications, 0 cliques
39.39/39.49	c presolved problem has 11442 variables (11442 bin, 0 int, 0 impl, 0 cont) and 110864 constraints
39.39/39.49	c  110864 constraints of type <logicor>
39.39/39.49	c transformed objective value is always integral (scale: 1)
39.39/39.49	c Presolving Time: 13.17
39.39/39.49	c - non default parameters ----------------------------------------------------------------------
39.39/39.49	c # SCIP version 1.2.1.2
39.39/39.49	c 
39.39/39.49	c # maximal number of intermediate conflict constraints generated in conflict graph (-1: use every intermediate constraint)
39.39/39.49	c # [type: int, range: [-1,2147483647], default: -1]
39.39/39.49	c conflict/interconss = 0
39.39/39.49	c 
39.39/39.49	c # should binary conflicts be preferred?
39.39/39.49	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
39.39/39.49	c conflict/preferbinary = TRUE
39.39/39.49	c 
39.39/39.49	c # maximum age an unnecessary constraint can reach before it is deleted (0: dynamic, -1: keep all constraints)
39.39/39.49	c # [type: int, range: [-1,2147483647], default: 0]
39.39/39.49	c constraints/agelimit = 1
39.39/39.49	c 
39.39/39.49	c # should enforcement of pseudo solution be disabled?
39.39/39.49	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
39.39/39.49	c constraints/disableenfops = TRUE
39.39/39.49	c 
39.39/39.49	c # frequency for displaying node information lines
39.39/39.49	c # [type: int, range: [-1,2147483647], default: 100]
39.39/39.49	c display/freq = 10000
39.39/39.49	c 
39.39/39.49	c # maximal time in seconds to run
39.39/39.49	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
39.39/39.49	c limits/time = 1778.68
39.39/39.49	c 
39.39/39.49	c # maximal memory usage in MB; reported memory usage is lower than real memory usage!
39.39/39.49	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
39.39/39.49	c limits/memory = 1620
39.39/39.49	c 
39.39/39.49	c # frequency for solving LP at the nodes (-1: never; 0: only root LP)
39.39/39.49	c # [type: int, range: [-1,2147483647], default: 1]
39.39/39.49	c lp/solvefreq = 0
39.39/39.49	c 
39.39/39.49	c # LP pricing strategy ('l'pi default, 'a'uto, 'f'ull pricing, 'p'artial, 's'teepest edge pricing, 'q'uickstart steepest edge pricing, 'd'evex pricing)
39.39/39.49	c # [type: char, range: {lafpsqd}, default: l]
39.39/39.49	c lp/pricing = a
39.39/39.49	c 
39.39/39.49	c # should presolving try to simplify inequalities
39.39/39.49	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
39.39/39.49	c constraints/linear/simplifyinequalities = TRUE
39.39/39.49	c 
39.39/39.49	c # should presolving try to simplify knapsacks
39.39/39.49	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
39.39/39.49	c constraints/knapsack/simplifyinequalities = TRUE
39.39/39.49	c 
39.39/39.49	c # priority of node selection rule <dfs> in standard mode
39.39/39.49	c # [type: int, range: [-536870912,536870911], default: 0]
39.39/39.49	c nodeselection/dfs/stdpriority = 1000000
39.39/39.49	c 
39.39/39.49	c -----------------------------------------------------------------------------------------------
39.39/39.49	c start solving
39.49/39.51	c 
39.49/39.54	o 166
39.49/39.54	c  time | node  | left  |LP iter|LP it/n| mem |mdpt |frac |vars |cons |cols |rows |cuts |confs|strbr|  dualbound   | primalbound  |  gap   
39.49/39.54	c t15.9s|     1 |     0 |     0 |     - | 660M|   0 |   - |  11k| 110k|   0 |   0 |   0 |   0 |   0 |      --      | 1.660000e+02 |    Inf 
303.61/303.72	c   279s|     1 |     0 | 25602 |     - | 709M|   0 |9823 |  11k| 110k|  11k| 110k|   0 |   0 |   0 | 1.000000e+01 | 1.660000e+02 |1560.00%
1149.26/1149.63	c  1120s|     1 |     0 | 68943 |     - | 710M|   0 |8710 |  11k| 110k|  11k| 110k|  32 |   0 |   0 | 1.400000e+01 | 1.660000e+02 |1085.71%
1549.24/1549.79	c  1515s|     1 |     0 | 88225 |     - | 710M|   0 |8805 |  11k| 110k|  11k| 110k|  44 |   0 |   0 | 1.500000e+01 | 1.660000e+02 |1006.67%
1800.09/1800.61	c pressed CTRL-C 1 times (5 times for forcing termination)

Verifier Data 

ERROR: no interpretation found !

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-2667117-1276622692/watcher-2667117-1276622692 -o /tmp/evaluation-result-2667117-1276622692/solver-2667117-1276622692 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt.spx -f HOME/instance-2667117-1276622692.opb -t 1800 -m 1800 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 1.04 1.00 1.00 3/106 5508
/proc/meminfo: memFree=1725952/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=6696 CPUtime=0
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 1003 0 0 0 0 0 0 0 21 0 1 0 37870723 6856704 922 1992294400 4194304 8223781 140737284426656 18446744073709551615 7302042 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5508/statm: 1931 932 348 984 0 944 0

[startup+0.0261349 s]
/proc/loadavg: 1.04 1.00 1.00 3/106 5508
/proc/meminfo: memFree=1725952/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=10800 CPUtime=0.01
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 1991 0 0 0 1 0 0 0 21 0 1 0 37870723 11059200 1910 1992294400 4194304 8223781 140737284426656 18446744073709551615 4907206 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5508/statm: 2700 1910 365 984 0 1713 0
Current children cumulated CPU time (s) 0.01
Current children cumulated vsize (KiB) 10800

[startup+0.101142 s]
/proc/loadavg: 1.04 1.00 1.00 3/106 5508
/proc/meminfo: memFree=1725952/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=18064 CPUtime=0.09
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 3838 0 0 0 8 1 0 0 21 0 1 0 37870723 18497536 3757 1992294400 4194304 8223781 140737284426656 18446744073709551615 5649661 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5508/statm: 4516 3757 365 984 0 3529 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 18064

[startup+0.30116 s]
/proc/loadavg: 1.04 1.00 1.00 3/106 5508
/proc/meminfo: memFree=1725952/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=22976 CPUtime=0.29
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 5060 0 0 0 27 2 0 0 21 0 1 0 37870723 23527424 4979 1992294400 4194304 8223781 140737284426656 18446744073709551615 7253477 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5508/statm: 5744 4979 365 984 0 4757 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 22976

[startup+0.701197 s]
/proc/loadavg: 1.04 1.00 1.00 3/106 5508
/proc/meminfo: memFree=1725952/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=30984 CPUtime=0.69
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 7056 0 0 0 66 3 0 0 22 0 1 0 37870723 31727616 6975 1992294400 4194304 8223781 140737284426656 18446744073709551615 4325415 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5508/statm: 7746 6975 365 984 0 6759 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 30984

[startup+1.50127 s]
/proc/loadavg: 1.04 1.00 1.00 2/107 5509
/proc/meminfo: memFree=1691596/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=47144 CPUtime=1.49
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 11092 0 0 0 144 5 0 0 25 0 1 0 37870723 48275456 11011 1992294400 4194304 8223781 140737284426656 18446744073709551615 7253477 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5508/statm: 11786 11011 365 984 0 10799 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 47144

[startup+3.10142 s]
/proc/loadavg: 1.04 1.00 1.00 2/107 5509
/proc/meminfo: memFree=1670392/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=79832 CPUtime=3.09
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 19228 0 0 0 301 8 0 0 25 0 1 0 37870723 81747968 19147 1992294400 4194304 8223781 140737284426656 18446744073709551615 7189756 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5508/statm: 19958 19147 365 984 0 18971 0
Current children cumulated CPU time (s) 3.09
Current children cumulated vsize (KiB) 79832

[startup+6.30072 s]
/proc/loadavg: 1.04 1.00 1.00 2/107 5509
/proc/meminfo: memFree=1602192/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=146156 CPUtime=6.29
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 35756 0 0 0 614 15 0 0 25 0 1 0 37870723 149663744 35675 1992294400 4194304 8223781 140737284426656 18446744073709551615 7246881 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5508/statm: 36539 35675 365 984 0 35552 0
Current children cumulated CPU time (s) 6.29
Current children cumulated vsize (KiB) 146156

[startup+12.7013 s]
/proc/loadavg: 1.04 1.00 1.00 2/107 5509
/proc/meminfo: memFree=1466412/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=278476 CPUtime=12.69
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 68712 0 0 0 1240 29 0 0 25 0 1 0 37870723 285159424 68631 1992294400 4194304 8223781 140737284426656 18446744073709551615 7253477 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5508/statm: 69619 68631 365 984 0 68632 0
Current children cumulated CPU time (s) 12.69
Current children cumulated vsize (KiB) 278476

[startup+25.5015 s]
/proc/loadavg: 1.03 1.00 1.00 2/107 5509
/proc/meminfo: memFree=516200/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1229436 CPUtime=25.49
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 323660 0 0 0 2427 122 0 0 25 0 1 0 37870723 1258942464 302308 1992294400 4194304 8223781 140737284426656 18446744073709551615 7294506 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 307359 302308 444 984 0 306372 0
Current children cumulated CPU time (s) 25.49
Current children cumulated vsize (KiB) 1229436

[startup+51.1009 s]
/proc/loadavg: 1.02 1.00 1.00 2/107 5511
/proc/meminfo: memFree=762836/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1007600 CPUtime=51.07
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 394019 0 0 0 4811 296 0 0 25 0 1 0 37870723 1031782400 240776 1992294400 4194304 8223781 140737284426656 18446744073709551615 6502734 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 251900 240776 535 984 0 250913 0
Current children cumulated CPU time (s) 51.07
Current children cumulated vsize (KiB) 1007600

[startup+102.309 s]
/proc/loadavg: 1.01 1.00 1.00 2/107 5513
/proc/meminfo: memFree=759364/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1021352 CPUtime=102.27
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 426648 0 0 0 9907 320 0 0 25 0 1 0 37870723 1045864448 241549 1992294400 4194304 8223781 140737284426656 18446744073709551615 6502724 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 255338 241549 535 984 0 254351 0
Current children cumulated CPU time (s) 102.27
Current children cumulated vsize (KiB) 1021352

[startup+162.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5513
/proc/meminfo: memFree=757876/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1023752 CPUtime=162.25
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 458814 0 0 0 15883 342 0 0 25 0 1 0 37870723 1048322048 241907 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568486 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 255938 241907 535 984 0 254951 0
Current children cumulated CPU time (s) 162.25
Current children cumulated vsize (KiB) 1023752

[startup+222.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5515
/proc/meminfo: memFree=757628/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1024056 CPUtime=222.23
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 489226 0 0 0 21860 363 0 0 25 0 1 0 37870723 1048633344 241975 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568426 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 256014 241975 535 984 0 255027 0
Current children cumulated CPU time (s) 222.23
Current children cumulated vsize (KiB) 1024056

[startup+282.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5517
/proc/meminfo: memFree=757628/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1024232 CPUtime=282.21
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 520758 0 0 0 27837 384 0 0 25 0 1 0 37870723 1048813568 241946 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568510 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 256058 241946 535 984 0 255071 0
Current children cumulated CPU time (s) 282.21
Current children cumulated vsize (KiB) 1024232

[startup+342.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5519
/proc/meminfo: memFree=741508/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1046700 CPUtime=342.2
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 775224 0 0 0 33642 578 0 0 25 0 1 0 37870723 1071820800 245321 1992294400 4194304 8223781 140737284426656 18446744073709551615 6569978 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 261675 245321 569 984 0 260688 0
Current children cumulated CPU time (s) 342.2
Current children cumulated vsize (KiB) 1046700

[startup+402.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5521
/proc/meminfo: memFree=743368/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1047412 CPUtime=402.18
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 812441 0 0 0 39618 600 0 0 25 0 1 0 37870723 1072549888 245617 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568077 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 261853 245617 569 984 0 260866 0
Current children cumulated CPU time (s) 402.18
Current children cumulated vsize (KiB) 1047412

[startup+462.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5521
/proc/meminfo: memFree=743120/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1047412 CPUtime=462.17
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 853575 0 0 0 45596 621 0 0 25 0 1 0 37870723 1072549888 245639 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568376 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 261853 245639 569 984 0 260866 0
Current children cumulated CPU time (s) 462.17
Current children cumulated vsize (KiB) 1047412

[startup+522.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5523
/proc/meminfo: memFree=743120/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1047412 CPUtime=522.14
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 900969 0 0 0 51568 646 0 0 25 0 1 0 37870723 1072549888 245672 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568482 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 261853 245672 569 984 0 260866 0
Current children cumulated CPU time (s) 522.14
Current children cumulated vsize (KiB) 1047412

[startup+582.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5525
/proc/meminfo: memFree=743120/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1047412 CPUtime=582.12
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 950913 0 0 0 57541 671 0 0 25 0 1 0 37870723 1072549888 245672 1992294400 4194304 8223781 140737284426656 18446744073709551615 6564834 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 261853 245672 569 984 0 260866 0
Current children cumulated CPU time (s) 582.12
Current children cumulated vsize (KiB) 1047412

[startup+642.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5527
/proc/meminfo: memFree=742996/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1047412 CPUtime=642.12
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 994794 0 0 0 63516 696 0 0 25 0 1 0 37870723 1072549888 245684 1992294400 4194304 8223781 140737284426656 18446744073709551615 6612661 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 261853 245684 569 984 0 260866 0
Current children cumulated CPU time (s) 642.12
Current children cumulated vsize (KiB) 1047412

[startup+702.302 s]

################
# More data... #
################

/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 1274292 0 0 0 105349 849 0 0 25 0 1 0 37870723 1072549888 245608 1992294400 4194304 8223781 140737284426656 18446744073709551615 6502720 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 261853 245608 569 984 0 260866 0
Current children cumulated CPU time (s) 1061.98
Current children cumulated vsize (KiB) 1047412

[startup+1122.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5539
/proc/meminfo: memFree=741136/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1047412 CPUtime=1121.97
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 1307011 0 0 0 111328 869 0 0 25 0 1 0 37870723 1072549888 246063 1992294400 4194304 8223781 140737284426656 18446744073709551615 6502734 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 261853 246063 569 984 0 260866 0
Current children cumulated CPU time (s) 1121.97
Current children cumulated vsize (KiB) 1047412

[startup+1182.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5541
/proc/meminfo: memFree=741012/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1046892 CPUtime=1181.95
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 2047943 0 0 0 117044 1151 0 0 25 0 1 0 37870723 1072017408 245925 1992294400 4194304 8223781 140737284426656 18446744073709551615 5743107 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 261723 245925 569 984 0 260736 0
Current children cumulated CPU time (s) 1181.95
Current children cumulated vsize (KiB) 1046892

[startup+1242.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5543
/proc/meminfo: memFree=741384/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1048160 CPUtime=1241.93
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 2095580 0 0 0 123017 1176 0 0 25 0 1 0 37870723 1073315840 245974 1992294400 4194304 8223781 140737284426656 18446744073709551615 6569884 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262040 245974 568 984 0 261053 0
Current children cumulated CPU time (s) 1241.93
Current children cumulated vsize (KiB) 1048160

[startup+1302.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5545
/proc/meminfo: memFree=741384/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1048160 CPUtime=1301.92
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 2140470 0 0 0 128991 1201 0 0 25 0 1 0 37870723 1073315840 245936 1992294400 4194304 8223781 140737284426656 18446744073709551615 6564601 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262040 245936 568 984 0 261053 0
Current children cumulated CPU time (s) 1301.92
Current children cumulated vsize (KiB) 1048160

[startup+1362.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5545
/proc/meminfo: memFree=741384/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1048160 CPUtime=1361.9
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 2193213 0 0 0 134961 1229 0 0 25 0 1 0 37870723 1073315840 245936 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568435 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262040 245936 568 984 0 261053 0
Current children cumulated CPU time (s) 1361.9
Current children cumulated vsize (KiB) 1048160

[startup+1422.31 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5547
/proc/meminfo: memFree=741384/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1048160 CPUtime=1421.88
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 2241385 0 0 0 140936 1252 0 0 25 0 1 0 37870723 1073315840 245946 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568466 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262040 245946 568 984 0 261053 0
Current children cumulated CPU time (s) 1421.88
Current children cumulated vsize (KiB) 1048160

[startup+1482.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5549
/proc/meminfo: memFree=741632/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1048160 CPUtime=1481.86
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 2294493 0 0 0 146905 1281 0 0 25 0 1 0 37870723 1073315840 245879 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568376 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262040 245879 568 984 0 261053 0
Current children cumulated CPU time (s) 1481.86
Current children cumulated vsize (KiB) 1048160

[startup+1542.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5551
/proc/meminfo: memFree=741384/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1048160 CPUtime=1541.85
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 2343358 0 0 0 152877 1308 0 0 25 0 1 0 37870723 1073315840 245954 1992294400 4194304 8223781 140737284426656 18446744073709551615 6569994 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262040 245954 568 984 0 261053 0
Current children cumulated CPU time (s) 1541.85
Current children cumulated vsize (KiB) 1048160

[startup+1602.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5553
/proc/meminfo: memFree=741012/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1048508 CPUtime=1601.82
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 4336950 0 0 0 158119 2063 0 0 25 0 1 0 37870723 1073672192 246053 1992294400 4194304 8223781 140737284426656 18446744073709551615 6299976 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262127 246053 568 984 0 261140 0
Current children cumulated CPU time (s) 1601.82
Current children cumulated vsize (KiB) 1048508

[startup+1662.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5553
/proc/meminfo: memFree=740888/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1047640 CPUtime=1661.81
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 6646264 0 0 0 163250 2931 0 0 25 0 1 0 37870723 1072783360 245836 1992294400 4194304 8223781 140737284426656 18446744073709551615 6047083 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 261910 245836 568 984 0 260923 0
Current children cumulated CPU time (s) 1661.81
Current children cumulated vsize (KiB) 1047640

[startup+1722.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5555
/proc/meminfo: memFree=740764/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1048508 CPUtime=1721.79
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 8991817 0 0 0 168360 3819 0 0 25 0 1 0 37870723 1073672192 246053 1992294400 4194304 8223781 140737284426656 18446744073709551615 6299966 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262127 246053 568 984 0 261140 0
Current children cumulated CPU time (s) 1721.79
Current children cumulated vsize (KiB) 1048508

[startup+1782.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5557
/proc/meminfo: memFree=739648/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1049480 CPUtime=1781.78
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 9425042 0 0 0 174192 3986 0 0 25 0 1 0 37870723 1074667520 246281 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568482 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262370 246281 568 984 0 261383 0
Current children cumulated CPU time (s) 1781.78
Current children cumulated vsize (KiB) 1049480



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1800.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5557
/proc/meminfo: memFree=739648/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1049504 CPUtime=1800.09
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 9439988 0 0 0 176016 3993 0 0 25 0 1 0 37870723 1074692096 246290 1992294400 4194304 8223781 140737284426656 18446744073709551615 6251377 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262376 246290 568 984 0 261389 0
Current children cumulated CPU time (s) 1800.09
Current children cumulated vsize (KiB) 1049504

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Sending SIGKILL to process tree (bottom up)

Sending SIGKILL to -5508

Solver just ended. Dumping a history of the last processes samples

[startup+1801.4 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5557
/proc/meminfo: memFree=739648/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1049504 CPUtime=1800.87
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 9444284 0 0 0 176092 3995 0 0 25 0 1 0 37870723 1074692096 246294 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568376 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262376 246294 568 984 0 261389 0
Current children cumulated CPU time (s) 1800.87
Current children cumulated vsize (KiB) 1049504

[startup+1802.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 5558
/proc/meminfo: memFree=739516/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1049504 CPUtime=1801.67
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 9444287 0 0 0 176172 3995 0 0 25 0 1 0 37870723 1074692096 246297 1992294400 4194304 8223781 140737284426656 18446744073709551615 6559356 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262376 246297 568 984 0 261389 0
Current children cumulated CPU time (s) 1801.67
Current children cumulated vsize (KiB) 1049504

[startup+1802.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 5558
/proc/meminfo: memFree=739516/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=1049504 CPUtime=1802.07
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4202496 9444289 0 0 0 176212 3995 0 0 25 0 1 0 37870723 1074692096 246299 1992294400 4194304 8223781 140737284426656 18446744073709551615 6568470 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5508/statm: 262376 246299 568 984 0 261389 0
Current children cumulated CPU time (s) 1802.07
Current children cumulated vsize (KiB) 1049504

[startup+1802.7 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 5558
/proc/meminfo: memFree=739516/2059040 swapFree=4135932/4192956
[pid=5508] ppid=5506 vsize=0 CPUtime=1802.18
/proc/5508/stat : 5508 (pbscip.linux.x8) R 5506 5508 5164 0 -1 4203524 9444289 0 0 0 176214 4004 0 0 25 0 1 0 37870723 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 18446744073709551615 0 0 17 1 0 0 0
/proc/5508/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1802.18
Current children cumulated vsize (KiB) 0

Child ended because it received signal 9 (SIGKILL)
Real time (s): 1802.72
CPU time (s): 1802.2
CPU user time (s): 1762.14
CPU system time (s): 40.0559
CPU usage (%): 99.9712
Max. virtual memory (cumulated for all children) (KiB): 1306468

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1762.14
system time used= 40.0559
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 9444289
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 1
involuntary context switches= 17385

runsolver used 3.13052 second user time and 8.36773 second system time

The end

Launcher Data 

Begin job on node015 at 2010-06-15 19:24:54
IDJOB=2667117
IDBENCH=2952
IDSOLVER=1169
FILE ID=node015/2667117-1276622692
PBS_JOBID= 11172307
Free space on /tmp= 62540 MiB

SOLVER NAME= SCIPspx SCIP 1.2.1.2 with SoPlex 1.4.2 (CVS Version 30.5.2010) as LP solver
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.11.opb
COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt.spx -f BENCHNAME -t TIMEOUT -m MEMLIMIT
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-2667117-1276622692/watcher-2667117-1276622692 -o /tmp/evaluation-result-2667117-1276622692/solver-2667117-1276622692 -C 1800 -W 2000 -M 1800  HOME/pbscip.linux.x86_64.gnu.opt.spx -f HOME/instance-2667117-1276622692.opb -t 1800 -m 1800

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= 5f844d3fbd9d157e56bab6c09ee5f179
RANDOM SEED=53330173

node015.alineos.net Linux 2.6.18-164.el5 #1 SMP Thu Sep 3 03:28:30 EDT 2009

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.244
cache size	: 2048 KB
physical id	: 0
siblings	: 1
core id		: 0
cpu cores	: 1
apicid		: 0
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr
bogomips	: 6000.48
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.244
cache size	: 2048 KB
physical id	: 3
siblings	: 1
core id		: 0
cpu cores	: 1
apicid		: 6
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5599.36
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2059040 kB
MemFree:       1726356 kB
Buffers:         86136 kB
Cached:         165588 kB
SwapCached:      11032 kB
Active:         139980 kB
Inactive:       126056 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2059040 kB
LowFree:       1726356 kB
SwapTotal:     4192956 kB
SwapFree:      4135932 kB
Dirty:           47424 kB
Writeback:           0 kB
AnonPages:       12528 kB
Mapped:           9392 kB
Slab:            44796 kB
PageTables:       4028 kB
NFS_Unstable:        0 kB
Bounce:              0 kB
CommitLimit:   5222476 kB
Committed_AS:   182588 kB
VmallocTotal: 34359738367 kB
VmallocUsed:    264948 kB
VmallocChunk: 34359471699 kB
HugePages_Total:     0
HugePages_Free:      0
HugePages_Rsvd:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 62536 MiB
End job on node015 at 2010-06-15 19:54:57