Trace number 2667108

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjective functionCPU timeWall clock time
SCIPspx SCIP 1.2.1.2 with SoPlex 1.4.2 (CVS Version 30.5.2010) as LP solver? (TO) 1802.14 1802.72

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-nonunif-100_100.07.opb
MD5SUM7a51facc2b0ceeb02915874508a30079
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkOPT
Best value of the objective obtained on this benchmark37
Best CPU time to get the best result obtained on this benchmark591
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 37
Optimality of the best value was proved YES
Number of variables21756
Total number of constraints1266468
Number of constraints which are clauses1262688
Number of constraints which are cardinality constraints (but not clauses)3780
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint168
Number of terms in the objective function 168
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 168
Number of bits of the sum of numbers in the objective function 8
Biggest number in a constraint 166
Number of bits of the biggest number in a constraint 8
Biggest sum of numbers in a constraint 334
Number of bits of the biggest sum of numbers9
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data 

0.00/0.00	c SCIP version 1.2.1.2 [precision: 8 byte] [memory: block] [mode: optimized] [LP solver: SoPlex 1.4.2] [Expressions interpreter: NONE]
0.00/0.00	c Copyright (c) 2002-2010 Konrad-Zuse-Zentrum fuer Informationstechnik Berlin (ZIB)
0.00/0.00	c 
0.00/0.00	c user parameter file <scip.set> not found - using default parameters
0.00/0.00	c reading problem <HOME/instance-2667108-1276622921.opb>
22.09/22.13	c original problem has 21756 variables (21756 bin, 0 int, 0 impl, 0 cont) and 1266468 constraints
22.09/22.13	c problem read
22.09/22.13	c presolving settings loaded
25.78/25.81	c presolving:
37.87/37.95	c (round 1) 9584 del vars, 1131751 del conss, 9140 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2936383 impls, 0 clqs
38.07/38.15	c (round 2) 9587 del vars, 1136608 del conss, 9140 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2936383 impls, 0 clqs
39.97/40.05	c (round 3) 9587 del vars, 1136608 del conss, 9140 chg bounds, 162 chg sides, 324 chg coeffs, 129860 upgd conss, 2936383 impls, 0 clqs
49.87/49.92	c    (25.2s) probing: 1000/12169 (8.2%) - 0 fixings, 0 aggregations, 8630 implications, 0 bound changes
61.47/61.56	c    (36.8s) probing: 2000/12169 (16.4%) - 0 fixings, 0 aggregations, 30913 implications, 0 bound changes
61.47/61.57	c    (36.8s) probing: 2001/12169 (16.4%) - 0 fixings, 0 aggregations, 30943 implications, 0 bound changes
61.47/61.57	c    (36.8s) probing aborted: 2000/2000 successive useless probings
61.47/61.57	c presolving (4 rounds):
61.47/61.57	c  9587 deleted vars, 1136608 deleted constraints, 9140 tightened bounds, 0 added holes, 162 changed sides, 324 changed coefficients
61.47/61.57	c  3001011 implications, 0 cliques
61.47/61.57	c presolved problem has 12169 variables (12169 bin, 0 int, 0 impl, 0 cont) and 129860 constraints
61.47/61.57	c  129860 constraints of type <logicor>
61.47/61.57	c transformed objective value is always integral (scale: 1)
61.47/61.57	c Presolving Time: 34.07
61.47/61.57	c - non default parameters ----------------------------------------------------------------------
61.47/61.57	c # SCIP version 1.2.1.2
61.47/61.57	c 
61.47/61.57	c # maximal number of intermediate conflict constraints generated in conflict graph (-1: use every intermediate constraint)
61.47/61.57	c # [type: int, range: [-1,2147483647], default: -1]
61.47/61.57	c conflict/interconss = 0
61.47/61.57	c 
61.47/61.57	c # should binary conflicts be preferred?
61.47/61.57	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
61.47/61.57	c conflict/preferbinary = TRUE
61.47/61.57	c 
61.47/61.57	c # maximum age an unnecessary constraint can reach before it is deleted (0: dynamic, -1: keep all constraints)
61.47/61.57	c # [type: int, range: [-1,2147483647], default: 0]
61.47/61.57	c constraints/agelimit = 1
61.47/61.57	c 
61.47/61.57	c # should enforcement of pseudo solution be disabled?
61.47/61.57	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
61.47/61.57	c constraints/disableenfops = TRUE
61.47/61.57	c 
61.47/61.57	c # frequency for displaying node information lines
61.47/61.57	c # [type: int, range: [-1,2147483647], default: 100]
61.47/61.57	c display/freq = 10000
61.47/61.57	c 
61.47/61.57	c # maximal time in seconds to run
61.47/61.57	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
61.47/61.57	c limits/time = 1777.88
61.47/61.57	c 
61.47/61.57	c # maximal memory usage in MB; reported memory usage is lower than real memory usage!
61.47/61.57	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
61.47/61.57	c limits/memory = 1620
61.47/61.57	c 
61.47/61.57	c # frequency for solving LP at the nodes (-1: never; 0: only root LP)
61.47/61.57	c # [type: int, range: [-1,2147483647], default: 1]
61.47/61.57	c lp/solvefreq = 0
61.47/61.57	c 
61.47/61.57	c # LP pricing strategy ('l'pi default, 'a'uto, 'f'ull pricing, 'p'artial, 's'teepest edge pricing, 'q'uickstart steepest edge pricing, 'd'evex pricing)
61.47/61.57	c # [type: char, range: {lafpsqd}, default: l]
61.47/61.57	c lp/pricing = a
61.47/61.57	c 
61.47/61.57	c # should presolving try to simplify inequalities
61.47/61.57	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
61.47/61.57	c constraints/linear/simplifyinequalities = TRUE
61.47/61.57	c 
61.47/61.57	c # should presolving try to simplify knapsacks
61.47/61.57	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
61.47/61.57	c constraints/knapsack/simplifyinequalities = TRUE
61.47/61.57	c 
61.47/61.57	c # priority of node selection rule <dfs> in standard mode
61.47/61.57	c # [type: int, range: [-536870912,536870911], default: 0]
61.47/61.57	c nodeselection/dfs/stdpriority = 1000000
61.47/61.57	c 
61.47/61.57	c -----------------------------------------------------------------------------------------------
61.47/61.57	c start solving
61.47/61.59	c 
61.57/61.63	o 165
61.57/61.63	c  time | node  | left  |LP iter|LP it/n| mem |mdpt |frac |vars |cons |cols |rows |cuts |confs|strbr|  dualbound   | primalbound  |  gap   
61.57/61.63	c t36.9s|     1 |     0 |     0 |     - | 692M|   0 |   - |  12k| 129k|   0 |   0 |   0 |   0 |   0 |      --      | 1.650000e+02 |    Inf 
384.96/385.17	c   359s|     1 |     0 | 26499 |     - | 749M|   0 |9653 |  12k| 129k|  12k| 129k|   0 |   0 |   0 | 5.000000e+00 | 1.650000e+02 |3200.00%
1800.03/1800.61	c pressed CTRL-C 1 times (5 times for forcing termination)

Verifier Data 

ERROR: no interpretation found !

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-2667108-1276622921/watcher-2667108-1276622921 -o /tmp/evaluation-result-2667108-1276622921/solver-2667108-1276622921 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt.spx -f HOME/instance-2667108-1276622921.opb -t 1800 -m 1800 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 1.00 1.02 1.02 3/106 5005
/proc/meminfo: memFree=1603232/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=7724 CPUtime=0
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1024 0 0 0 0 0 0 0 18 0 1 0 37896021 7909376 944 1992294400 4194304 8223781 140735090630176 18446744073709551615 7253477 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5005/statm: 1931 953 348 984 0 944 0

[startup+0.093734 s]
/proc/loadavg: 1.00 1.02 1.02 3/106 5005
/proc/meminfo: memFree=1603232/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=17584 CPUtime=0.08
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 3710 0 0 0 7 1 0 0 20 0 1 0 37896021 18006016 3630 1992294400 4194304 8223781 140735090630176 18446744073709551615 7246475 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5005/statm: 4396 3630 365 984 0 3409 0
Current children cumulated CPU time (s) 0.08
Current children cumulated vsize (KiB) 17584

[startup+0.100733 s]
/proc/loadavg: 1.00 1.02 1.02 3/106 5005
/proc/meminfo: memFree=1603232/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=18056 CPUtime=0.09
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 3835 0 0 0 8 1 0 0 20 0 1 0 37896021 18489344 3755 1992294400 4194304 8223781 140735090630176 18446744073709551615 7253477 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5005/statm: 4514 3755 365 984 0 3527 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 18056

[startup+0.300756 s]
/proc/loadavg: 1.00 1.02 1.02 3/106 5005
/proc/meminfo: memFree=1603232/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=22956 CPUtime=0.29
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 5054 0 0 0 27 2 0 0 20 0 1 0 37896021 23506944 4974 1992294400 4194304 8223781 140735090630176 18446744073709551615 7253477 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5005/statm: 5739 4974 365 984 0 4752 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 22956

[startup+0.700804 s]
/proc/loadavg: 1.00 1.02 1.02 3/106 5005
/proc/meminfo: memFree=1603232/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=30964 CPUtime=0.69
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 7051 0 0 0 66 3 0 0 21 0 1 0 37896021 31707136 6971 1992294400 4194304 8223781 140735090630176 18446744073709551615 7253477 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5005/statm: 7741 6971 365 984 0 6754 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 30964

[startup+1.5009 s]
/proc/loadavg: 1.00 1.02 1.02 2/107 5008
/proc/meminfo: memFree=1568876/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=47124 CPUtime=1.49
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 11086 0 0 0 145 4 0 0 23 0 1 0 37896021 48254976 11006 1992294400 4194304 8223781 140735090630176 18446744073709551615 7253477 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5005/statm: 11781 11007 365 984 0 10794 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 47124

[startup+3.10108 s]
/proc/loadavg: 1.00 1.02 1.02 2/107 5008
/proc/meminfo: memFree=1547548/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=79948 CPUtime=3.09
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 19274 0 0 0 300 9 0 0 25 0 1 0 37896021 81866752 19194 1992294400 4194304 8223781 140735090630176 18446744073709551615 7253477 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5005/statm: 19987 19194 365 984 0 19000 0
Current children cumulated CPU time (s) 3.09
Current children cumulated vsize (KiB) 79948

[startup+6.30145 s]
/proc/loadavg: 1.00 1.02 1.02 2/107 5008
/proc/meminfo: memFree=1479348/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=148136 CPUtime=6.29
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 36273 0 0 0 613 16 0 0 25 0 1 0 37896021 151691264 36193 1992294400 4194304 8223781 140735090630176 18446744073709551615 6640005 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5005/statm: 37034 36193 365 984 0 36047 0
Current children cumulated CPU time (s) 6.29
Current children cumulated vsize (KiB) 148136

[startup+12.7012 s]
/proc/loadavg: 1.00 1.02 1.02 2/107 5008
/proc/meminfo: memFree=1341584/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=280712 CPUtime=12.69
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 69283 0 0 0 1239 30 0 0 25 0 1 0 37896021 287449088 69203 1992294400 4194304 8223781 140735090630176 18446744073709551615 7253477 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5005/statm: 70178 69203 365 984 0 69191 0
Current children cumulated CPU time (s) 12.69
Current children cumulated vsize (KiB) 280712

[startup+25.5007 s]
/proc/loadavg: 1.00 1.01 1.02 2/107 5008
/proc/meminfo: memFree=407368/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1255112 CPUtime=25.48
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 331408 0 0 0 2422 126 0 0 25 0 1 0 37896021 1285234688 309931 1992294400 4194304 8223781 140735090630176 18446744073709551615 6205568 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 313778 309944 390 984 0 312791 0
Current children cumulated CPU time (s) 25.48
Current children cumulated vsize (KiB) 1255112

[startup+51.1006 s]
/proc/loadavg: 1.00 1.01 1.02 2/107 5008
/proc/meminfo: memFree=666652/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=954152 CPUtime=51.06
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 377379 0 0 0 4801 305 0 0 25 0 1 0 37896021 977051648 234164 1992294400 4194304 8223781 140735090630176 18446744073709551615 4999837 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 238538 234164 524 984 0 237551 0
Current children cumulated CPU time (s) 51.06
Current children cumulated vsize (KiB) 954152

[startup+102.308 s]
/proc/loadavg: 1.00 1.01 1.01 2/107 5010
/proc/meminfo: memFree=549720/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1106788 CPUtime=102.26
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 437982 0 0 0 9886 340 0 0 25 0 1 0 37896021 1133350912 263329 1992294400 4194304 8223781 140735090630176 18446744073709551615 6502720 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 276697 263329 535 984 0 275710 0
Current children cumulated CPU time (s) 102.26
Current children cumulated vsize (KiB) 1106788

[startup+162.3 s]
/proc/loadavg: 1.00 1.00 1.01 2/107 5012
/proc/meminfo: memFree=546744/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1116736 CPUtime=162.23
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 475926 0 0 0 15858 365 0 0 25 0 1 0 37896021 1143537664 264096 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568128 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 279184 264096 535 984 0 278197 0
Current children cumulated CPU time (s) 162.23
Current children cumulated vsize (KiB) 1116736

[startup+222.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5012
/proc/meminfo: memFree=545876/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1117776 CPUtime=222.21
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 502987 0 0 0 21838 383 0 0 25 0 1 0 37896021 1144602624 264284 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568486 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 279444 264284 535 984 0 278457 0
Current children cumulated CPU time (s) 222.21
Current children cumulated vsize (KiB) 1117776

[startup+282.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5014
/proc/meminfo: memFree=545628/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1117920 CPUtime=282.19
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 529444 0 0 0 27819 400 0 0 25 0 1 0 37896021 1144750080 264296 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568077 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 279480 264296 535 984 0 278493 0
Current children cumulated CPU time (s) 282.19
Current children cumulated vsize (KiB) 1117920

[startup+342.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5016
/proc/meminfo: memFree=545752/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1117992 CPUtime=342.17
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 554218 0 0 0 33799 418 0 0 25 0 1 0 37896021 1144823808 264302 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568399 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 279498 264302 535 984 0 278511 0
Current children cumulated CPU time (s) 342.17
Current children cumulated vsize (KiB) 1117992

[startup+402.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5018
/proc/meminfo: memFree=543644/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126172 CPUtime=402.16
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 873401 0 0 0 39668 548 0 0 25 0 1 0 37896021 1153200128 264867 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568490 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281543 264867 549 984 0 280556 0
Current children cumulated CPU time (s) 402.16
Current children cumulated vsize (KiB) 1126172

[startup+462.3 s]
/proc/loadavg: 1.06 1.01 1.00 2/107 5020
/proc/meminfo: memFree=543396/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=462.14
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 924039 0 0 0 45639 575 0 0 25 0 1 0 37896021 1153290240 264908 1992294400 4194304 8223781 140735090630176 18446744073709551615 6502720 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 264908 549 984 0 280578 0
Current children cumulated CPU time (s) 462.14
Current children cumulated vsize (KiB) 1126260

[startup+522.301 s]
/proc/loadavg: 1.02 1.01 1.00 2/107 5020
/proc/meminfo: memFree=543396/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=522.12
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 967041 0 0 0 51615 597 0 0 25 0 1 0 37896021 1153290240 264901 1992294400 4194304 8223781 140735090630176 18446744073709551615 6251373 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 264901 549 984 0 280578 0
Current children cumulated CPU time (s) 522.12
Current children cumulated vsize (KiB) 1126260

[startup+582.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5022
/proc/meminfo: memFree=541908/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=582.1
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1014249 0 0 0 57589 621 0 0 25 0 1 0 37896021 1153290240 265269 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568490 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265269 549 984 0 280578 0
Current children cumulated CPU time (s) 582.1
Current children cumulated vsize (KiB) 1126260

[startup+642.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5024
/proc/meminfo: memFree=541908/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=642.09
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1054918 0 0 0 63566 643 0 0 25 0 1 0 37896021 1153290240 265263 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568376 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265263 549 984 0 280578 0
Current children cumulated CPU time (s) 642.09
Current children cumulated vsize (KiB) 1126260

[startup+702.301 s]

################
# More data... #
################

/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1367197 0 0 0 105390 806 0 0 25 0 1 0 37896021 1153290240 265283 1992294400 4194304 8223781 140735090630176 18446744073709551615 6502686 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265283 549 984 0 280578 0
Current children cumulated CPU time (s) 1061.96
Current children cumulated vsize (KiB) 1126260

[startup+1122.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5036
/proc/meminfo: memFree=541660/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1121.94
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1416535 0 0 0 111364 830 0 0 25 0 1 0 37896021 1153290240 265281 1992294400 4194304 8223781 140735090630176 18446744073709551615 6569869 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265281 549 984 0 280578 0
Current children cumulated CPU time (s) 1121.94
Current children cumulated vsize (KiB) 1126260

[startup+1182.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5038
/proc/meminfo: memFree=541536/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1181.92
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1454359 0 0 0 117343 849 0 0 25 0 1 0 37896021 1153290240 265247 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568490 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265247 549 984 0 280578 0
Current children cumulated CPU time (s) 1181.92
Current children cumulated vsize (KiB) 1126260

[startup+1242.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5040
/proc/meminfo: memFree=541536/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1241.9
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1492135 0 0 0 123322 868 0 0 25 0 1 0 37896021 1153290240 265312 1992294400 4194304 8223781 140735090630176 18446744073709551615 6539610 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265312 549 984 0 280578 0
Current children cumulated CPU time (s) 1241.9
Current children cumulated vsize (KiB) 1126260

[startup+1302.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5042
/proc/meminfo: memFree=541040/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1301.89
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1521579 0 0 0 129306 883 0 0 25 0 1 0 37896021 1153290240 265429 1992294400 4194304 8223781 140735090630176 18446744073709551615 6612629 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265429 549 984 0 280578 0
Current children cumulated CPU time (s) 1301.89
Current children cumulated vsize (KiB) 1126260

[startup+1362.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5044
/proc/meminfo: memFree=541040/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1361.86
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1560879 0 0 0 135283 903 0 0 25 0 1 0 37896021 1153290240 265424 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568399 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265424 549 984 0 280578 0
Current children cumulated CPU time (s) 1361.86
Current children cumulated vsize (KiB) 1126260

[startup+1422.31 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5044
/proc/meminfo: memFree=541288/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1421.85
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1597374 0 0 0 141263 922 0 0 25 0 1 0 37896021 1153290240 265355 1992294400 4194304 8223781 140735090630176 18446744073709551615 6560128 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265355 549 984 0 280578 0
Current children cumulated CPU time (s) 1421.85
Current children cumulated vsize (KiB) 1126260

[startup+1482.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5046
/proc/meminfo: memFree=541164/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1481.82
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1624268 0 0 0 147247 935 0 0 25 0 1 0 37896021 1153290240 265384 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568171 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265384 549 984 0 280578 0
Current children cumulated CPU time (s) 1481.82
Current children cumulated vsize (KiB) 1126260

[startup+1542.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5048
/proc/meminfo: memFree=541412/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1541.8
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1655380 0 0 0 153227 953 0 0 25 0 1 0 37896021 1153290240 265318 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568081 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265318 549 984 0 280578 0
Current children cumulated CPU time (s) 1541.8
Current children cumulated vsize (KiB) 1126260

[startup+1602.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5050
/proc/meminfo: memFree=541164/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1601.78
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1698218 0 0 0 159203 975 0 0 25 0 1 0 37896021 1153290240 265360 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568087 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265360 549 984 0 280578 0
Current children cumulated CPU time (s) 1601.78
Current children cumulated vsize (KiB) 1126260

[startup+1662.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5052
/proc/meminfo: memFree=541040/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1661.76
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1734362 0 0 0 165183 993 0 0 25 0 1 0 37896021 1153290240 265401 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568081 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265401 549 984 0 280578 0
Current children cumulated CPU time (s) 1661.76
Current children cumulated vsize (KiB) 1126260

[startup+1722.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5052
/proc/meminfo: memFree=541412/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1721.74
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1767290 0 0 0 171164 1010 0 0 25 0 1 0 37896021 1153290240 265303 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568376 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265303 549 984 0 280578 0
Current children cumulated CPU time (s) 1721.74
Current children cumulated vsize (KiB) 1126260

[startup+1782.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5054
/proc/meminfo: memFree=540420/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1781.72
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1813425 0 0 0 177140 1032 0 0 25 0 1 0 37896021 1153290240 265534 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568376 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265534 549 984 0 280578 0
Current children cumulated CPU time (s) 1781.72
Current children cumulated vsize (KiB) 1126260



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1800.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5054
/proc/meminfo: memFree=540544/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1800.03
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1820514 0 0 0 178967 1036 0 0 25 0 1 0 37896021 1153290240 265503 1992294400 4194304 8223781 140735090630176 18446744073709551615 6569869 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265503 549 984 0 280578 0
Current children cumulated CPU time (s) 1800.03
Current children cumulated vsize (KiB) 1126260

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Sending SIGKILL to process tree (bottom up)

Sending SIGKILL to -5005

Solver just ended. Dumping a history of the last processes samples

[startup+1801.4 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5054
/proc/meminfo: memFree=540544/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1800.81
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1820518 0 0 0 179045 1036 0 0 25 0 1 0 37896021 1153290240 265507 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568376 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265507 549 984 0 280578 0
Current children cumulated CPU time (s) 1800.81
Current children cumulated vsize (KiB) 1126260

[startup+1802.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 5057
/proc/meminfo: memFree=540536/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1801.61
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1825057 0 0 0 179123 1038 0 0 25 0 1 0 37896021 1153290240 265469 1992294400 4194304 8223781 140735090630176 18446744073709551615 6568380 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265469 549 984 0 280578 0
Current children cumulated CPU time (s) 1801.61
Current children cumulated vsize (KiB) 1126260

[startup+1802.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 5057
/proc/meminfo: memFree=540536/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=1126260 CPUtime=1802.01
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4202496 1825058 0 0 0 179163 1038 0 0 25 0 1 0 37896021 1153290240 265470 1992294400 4194304 8223781 140735090630176 18446744073709551615 6567951 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5005/statm: 281565 265470 549 984 0 280578 0
Current children cumulated CPU time (s) 1802.01
Current children cumulated vsize (KiB) 1126260

[startup+1802.7 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 5057
/proc/meminfo: memFree=540536/2059040 swapFree=4140048/4192956
[pid=5005] ppid=5003 vsize=0 CPUtime=1802.12
/proc/5005/stat : 5005 (pbscip.linux.x8) R 5003 5005 4640 0 -1 4203524 1825058 0 0 0 179165 1047 0 0 25 0 1 0 37896021 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 18446744073709551615 0 0 17 1 0 0 0
/proc/5005/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1802.12
Current children cumulated vsize (KiB) 0

Child ended because it received signal 9 (SIGKILL)
Real time (s): 1802.72
CPU time (s): 1802.14
CPU user time (s): 1791.65
CPU system time (s): 10.4924
CPU usage (%): 99.9679
Max. virtual memory (cumulated for all children) (KiB): 1388608

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1791.65
system time used= 10.4924
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 1825058
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 3
involuntary context switches= 6149

runsolver used 3.02554 second user time and 8.47171 second system time

The end

Launcher Data 

Begin job on node006 at 2010-06-15 19:28:44
IDJOB=2667108
IDBENCH=2953
IDSOLVER=1169
FILE ID=node006/2667108-1276622921
PBS_JOBID= 11172306
Free space on /tmp= 62460 MiB

SOLVER NAME= SCIPspx SCIP 1.2.1.2 with SoPlex 1.4.2 (CVS Version 30.5.2010) as LP solver
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.07.opb
COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt.spx -f BENCHNAME -t TIMEOUT -m MEMLIMIT
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-2667108-1276622921/watcher-2667108-1276622921 -o /tmp/evaluation-result-2667108-1276622921/solver-2667108-1276622921 -C 1800 -W 2000 -M 1800  HOME/pbscip.linux.x86_64.gnu.opt.spx -f HOME/instance-2667108-1276622921.opb -t 1800 -m 1800

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= 7a51facc2b0ceeb02915874508a30079
RANDOM SEED=387206154

node006.alineos.net Linux 2.6.18-164.el5 #1 SMP Thu Sep 3 03:28:30 EDT 2009

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.204
cache size	: 2048 KB
physical id	: 0
siblings	: 1
core id		: 0
cpu cores	: 1
apicid		: 0
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr
bogomips	: 6000.40
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.204
cache size	: 2048 KB
physical id	: 3
siblings	: 1
core id		: 0
cpu cores	: 1
apicid		: 6
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5599.45
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2059040 kB
MemFree:       1603760 kB
Buffers:        122996 kB
Cached:         246088 kB
SwapCached:       6988 kB
Active:         163936 kB
Inactive:       219728 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2059040 kB
LowFree:       1603760 kB
SwapTotal:     4192956 kB
SwapFree:      4140048 kB
Dirty:           49456 kB
Writeback:           0 kB
AnonPages:       12656 kB
Mapped:          13168 kB
Slab:            49952 kB
PageTables:       4004 kB
NFS_Unstable:        0 kB
Bounce:              0 kB
CommitLimit:   5222476 kB
Committed_AS:   181380 kB
VmallocTotal: 34359738367 kB
VmallocUsed:    264948 kB
VmallocChunk: 34359471699 kB
HugePages_Total:     0
HugePages_Free:      0
HugePages_Rsvd:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 62456 MiB
End job on node006 at 2010-06-15 19:58:46