Trace number 2665678

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjective functionCPU timeWall clock time
SCIPclp SCIP 1.2.1.2 with Clp 1.11.1 (Release Version) as LP solver? (TO) 1802.19 1802.91

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-nonunif-100_100.07.opb
MD5SUM7a51facc2b0ceeb02915874508a30079
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkOPT
Best value of the objective obtained on this benchmark37
Best CPU time to get the best result obtained on this benchmark591
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 37
Optimality of the best value was proved YES
Number of variables21756
Total number of constraints1266468
Number of constraints which are clauses1262688
Number of constraints which are cardinality constraints (but not clauses)3780
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint168
Number of terms in the objective function 168
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 168
Number of bits of the sum of numbers in the objective function 8
Biggest number in a constraint 166
Number of bits of the biggest number in a constraint 8
Biggest sum of numbers in a constraint 334
Number of bits of the biggest sum of numbers9
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data 

0.00/0.00	c SCIP version 1.2.1.2 [precision: 8 byte] [memory: block] [mode: optimized] [LP solver: Clp 1.11.1] [Expressions interpreter: NONE]
0.00/0.00	c Copyright (c) 2002-2010 Konrad-Zuse-Zentrum fuer Informationstechnik Berlin (ZIB)
0.00/0.00	c 
0.00/0.00	c user parameter file <scip.set> not found - using default parameters
0.00/0.00	c reading problem <HOME/instance-2665678-1276622907.opb>
22.08/22.15	c original problem has 21756 variables (21756 bin, 0 int, 0 impl, 0 cont) and 1266468 constraints
22.08/22.15	c problem read
22.08/22.15	c presolving settings loaded
25.68/25.77	c presolving:
37.86/37.92	c (round 1) 9584 del vars, 1131751 del conss, 9140 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2936383 impls, 0 clqs
38.06/38.12	c (round 2) 9587 del vars, 1136608 del conss, 9140 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2936383 impls, 0 clqs
39.86/39.92	c (round 3) 9587 del vars, 1136608 del conss, 9140 chg bounds, 162 chg sides, 324 chg coeffs, 129860 upgd conss, 2936383 impls, 0 clqs
49.76/49.82	c    (25.1s) probing: 1000/12169 (8.2%) - 0 fixings, 0 aggregations, 8630 implications, 0 bound changes
61.46/61.50	c    (36.8s) probing: 2000/12169 (16.4%) - 0 fixings, 0 aggregations, 30913 implications, 0 bound changes
61.46/61.51	c    (36.8s) probing: 2001/12169 (16.4%) - 0 fixings, 0 aggregations, 30943 implications, 0 bound changes
61.46/61.51	c    (36.8s) probing aborted: 2000/2000 successive useless probings
61.46/61.51	c presolving (4 rounds):
61.46/61.51	c  9587 deleted vars, 1136608 deleted constraints, 9140 tightened bounds, 0 added holes, 162 changed sides, 324 changed coefficients
61.46/61.51	c  3001011 implications, 0 cliques
61.46/61.51	c presolved problem has 12169 variables (12169 bin, 0 int, 0 impl, 0 cont) and 129860 constraints
61.46/61.51	c  129860 constraints of type <logicor>
61.46/61.51	c transformed objective value is always integral (scale: 1)
61.46/61.51	c Presolving Time: 34.10
61.46/61.51	c - non default parameters ----------------------------------------------------------------------
61.46/61.51	c # SCIP version 1.2.1.2
61.46/61.51	c 
61.46/61.51	c # maximal number of intermediate conflict constraints generated in conflict graph (-1: use every intermediate constraint)
61.46/61.51	c # [type: int, range: [-1,2147483647], default: -1]
61.46/61.51	c conflict/interconss = 0
61.46/61.51	c 
61.46/61.51	c # should binary conflicts be preferred?
61.46/61.51	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
61.46/61.51	c conflict/preferbinary = TRUE
61.46/61.51	c 
61.46/61.51	c # maximum age an unnecessary constraint can reach before it is deleted (0: dynamic, -1: keep all constraints)
61.46/61.51	c # [type: int, range: [-1,2147483647], default: 0]
61.46/61.51	c constraints/agelimit = 1
61.46/61.51	c 
61.46/61.51	c # should enforcement of pseudo solution be disabled?
61.46/61.51	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
61.46/61.51	c constraints/disableenfops = TRUE
61.46/61.51	c 
61.46/61.51	c # frequency for displaying node information lines
61.46/61.51	c # [type: int, range: [-1,2147483647], default: 100]
61.46/61.51	c display/freq = 10000
61.46/61.51	c 
61.46/61.51	c # maximal time in seconds to run
61.46/61.51	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
61.46/61.51	c limits/time = 1777.87
61.46/61.51	c 
61.46/61.51	c # maximal memory usage in MB; reported memory usage is lower than real memory usage!
61.46/61.51	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
61.46/61.51	c limits/memory = 1620
61.46/61.51	c 
61.46/61.51	c # frequency for solving LP at the nodes (-1: never; 0: only root LP)
61.46/61.51	c # [type: int, range: [-1,2147483647], default: 1]
61.46/61.51	c lp/solvefreq = 0
61.46/61.51	c 
61.46/61.51	c # LP pricing strategy ('l'pi default, 'a'uto, 'f'ull pricing, 'p'artial, 's'teepest edge pricing, 'q'uickstart steepest edge pricing, 'd'evex pricing)
61.46/61.51	c # [type: char, range: {lafpsqd}, default: l]
61.46/61.51	c lp/pricing = a
61.46/61.51	c 
61.46/61.51	c # should presolving try to simplify inequalities
61.46/61.51	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
61.46/61.51	c constraints/linear/simplifyinequalities = TRUE
61.46/61.51	c 
61.46/61.51	c # should presolving try to simplify knapsacks
61.46/61.51	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
61.46/61.51	c constraints/knapsack/simplifyinequalities = TRUE
61.46/61.51	c 
61.46/61.51	c # priority of node selection rule <dfs> in standard mode
61.46/61.51	c # [type: int, range: [-536870912,536870911], default: 0]
61.46/61.51	c nodeselection/dfs/stdpriority = 1000000
61.46/61.51	c 
61.46/61.51	c -----------------------------------------------------------------------------------------------
61.46/61.51	c start solving
61.46/61.53	c 
61.46/61.57	o 165
61.46/61.57	c  time | node  | left  |LP iter|LP it/n| mem |mdpt |frac |vars |cons |cols |rows |cuts |confs|strbr|  dualbound   | primalbound  |  gap   
61.46/61.57	c t36.9s|     1 |     0 |     0 |     - | 692M|   0 |   - |  12k| 129k|   0 |   0 |   0 |   0 |   0 |      --      | 1.650000e+02 |    Inf 
177.51/177.63	c   152s|     1 |     0 | 22128 |     - | 749M|   0 |  11k|  12k| 129k|  12k| 129k|   0 |   0 |   0 | 5.000000e+00 | 1.650000e+02 |3200.00%
1348.25/1348.87	c  1319s|     1 |     0 | 72854 |     - | 752M|   0 |  10k|  12k| 129k|  12k| 131k|2000 |   0 |   0 | 2.170571e+01 | 1.650000e+02 | 660.17%
1800.08/1800.80	c pressed CTRL-C 1 times (5 times for forcing termination)

Verifier Data 

ERROR: no interpretation found !

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-2665678-1276622907/watcher-2665678-1276622907 -o /tmp/evaluation-result-2665678-1276622907/solver-2665678-1276622907 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt.clp -f HOME/instance-2665678-1276622907.opb -t 1800 -m 1800 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 1.00 1.00 1.00 3/106 5735
/proc/meminfo: memFree=1722744/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=9288 CPUtime=0
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1148 0 0 0 0 0 0 0 18 0 1 0 35947271 9510912 1068 1992294400 4194304 9819077 140735092071808 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5735/statm: 2322 1082 371 1374 0 943 0

[startup+0.0520489 s]
/proc/loadavg: 1.00 1.00 1.00 3/106 5735
/proc/meminfo: memFree=1722744/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=16240 CPUtime=0.04
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 2996 0 0 0 4 0 0 0 20 0 1 0 35947271 16629760 2916 1992294400 4194304 9819077 140735092071808 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5735/statm: 4060 2916 388 1374 0 2681 0
Current children cumulated CPU time (s) 0.04
Current children cumulated vsize (KiB) 16240

[startup+0.101056 s]
/proc/loadavg: 1.00 1.00 1.00 3/106 5735
/proc/meminfo: memFree=1722744/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=19624 CPUtime=0.09
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 3855 0 0 0 8 1 0 0 20 0 1 0 35947271 20094976 3775 1992294400 4194304 9819077 140735092071808 18446744073709551615 5648489 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5735/statm: 4906 3775 388 1374 0 3527 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 19624

[startup+0.301093 s]
/proc/loadavg: 1.00 1.00 1.00 3/106 5735
/proc/meminfo: memFree=1722744/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=24520 CPUtime=0.29
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 5074 0 0 0 28 1 0 0 20 0 1 0 35947271 25108480 4994 1992294400 4194304 9819077 140735092071808 18446744073709551615 4466976 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5735/statm: 6130 4994 388 1374 0 4751 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 24520

[startup+0.701169 s]
/proc/loadavg: 1.00 1.00 1.00 3/106 5735
/proc/meminfo: memFree=1722744/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=32528 CPUtime=0.69
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 7070 0 0 0 67 2 0 0 21 0 1 0 35947271 33308672 6990 1992294400 4194304 9819077 140735092071808 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5735/statm: 8132 6990 388 1374 0 6753 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 32528

[startup+1.50132 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5736
/proc/meminfo: memFree=1688512/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=48688 CPUtime=1.49
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 11106 0 0 0 145 4 0 0 23 0 1 0 35947271 49856512 11026 1992294400 4194304 9819077 140735092071808 18446744073709551615 8668245 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5735/statm: 12172 11026 388 1374 0 10793 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 48688

[startup+3.10162 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5736
/proc/meminfo: memFree=1667184/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=81512 CPUtime=3.09
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 19293 0 0 0 302 7 0 0 25 0 1 0 35947271 83468288 19213 1992294400 4194304 9819077 140735092071808 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5735/statm: 20378 19213 388 1374 0 18999 0
Current children cumulated CPU time (s) 3.09
Current children cumulated vsize (KiB) 81512

[startup+6.30121 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5738
/proc/meminfo: memFree=1598736/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=148668 CPUtime=6.29
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 36033 0 0 0 615 14 0 0 25 0 1 0 35947271 152236032 35953 1992294400 4194304 9819077 140735092071808 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5735/statm: 37167 35953 388 1374 0 35788 0
Current children cumulated CPU time (s) 6.29
Current children cumulated vsize (KiB) 148668

[startup+12.7014 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5738
/proc/meminfo: memFree=1462088/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=282276 CPUtime=12.69
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 69301 0 0 0 1241 28 0 0 25 0 1 0 35947271 289050624 69221 1992294400 4194304 9819077 140735092071808 18446744073709551615 8610946 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/5735/statm: 70569 69221 388 1374 0 69190 0
Current children cumulated CPU time (s) 12.69
Current children cumulated vsize (KiB) 282276

[startup+25.5008 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5738
/proc/meminfo: memFree=522292/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1263548 CPUtime=25.48
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 333516 0 0 0 2424 124 0 0 25 0 1 0 35947271 1293873152 311997 1992294400 4194304 9819077 140735092071808 18446744073709551615 8678384 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 315887 311997 438 1374 0 314508 0
Current children cumulated CPU time (s) 25.48
Current children cumulated vsize (KiB) 1263548

[startup+51.1006 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5738
/proc/meminfo: memFree=786660/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=954832 CPUtime=51.05
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 377540 0 0 0 4808 297 0 0 25 0 1 0 35947271 977747968 234066 1992294400 4194304 9819077 140735092071808 18446744073709551615 4223163 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 238708 234066 523 1374 0 237329 0
Current children cumulated CPU time (s) 51.05
Current children cumulated vsize (KiB) 954832

[startup+102.308 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5740
/proc/meminfo: memFree=678284/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1153824 CPUtime=102.25
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 509535 0 0 0 9864 361 0 0 25 0 1 0 35947271 1181515776 261268 1992294400 4194304 9819077 140735092071808 18446744073709551615 7295939 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288456 261268 636 1374 0 287077 0
Current children cumulated CPU time (s) 102.25
Current children cumulated vsize (KiB) 1153824

[startup+162.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5742
/proc/meminfo: memFree=673696/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1155908 CPUtime=162.22
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 571898 0 0 0 15826 396 0 0 25 0 1 0 35947271 1183649792 262392 1992294400 4194304 9819077 140735092071808 18446744073709551615 6190584 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288977 262392 636 1374 0 287598 0
Current children cumulated CPU time (s) 162.22
Current children cumulated vsize (KiB) 1155908

[startup+222.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5742
/proc/meminfo: memFree=686220/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1156240 CPUtime=222.19
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 628575 0 0 0 21793 426 0 0 25 0 1 0 35947271 1183989760 259196 1992294400 4194304 9819077 140735092071808 18446744073709551615 7304794 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 289060 259196 646 1374 0 287681 0
Current children cumulated CPU time (s) 222.19
Current children cumulated vsize (KiB) 1156240

[startup+282.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5744
/proc/meminfo: memFree=673820/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1156152 CPUtime=282.17
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 659895 0 0 0 27773 444 0 0 25 0 1 0 35947271 1183899648 262374 1992294400 4194304 9819077 140735092071808 18446744073709551615 6198708 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 289038 262374 646 1374 0 287659 0
Current children cumulated CPU time (s) 282.17
Current children cumulated vsize (KiB) 1156152

[startup+342.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5746
/proc/meminfo: memFree=674440/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1155988 CPUtime=342.15
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 697915 0 0 0 33751 464 0 0 25 0 1 0 35947271 1183731712 262168 1992294400 4194304 9819077 140735092071808 18446744073709551615 6191199 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288997 262168 646 1374 0 287618 0
Current children cumulated CPU time (s) 342.15
Current children cumulated vsize (KiB) 1155988

[startup+402.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5748
/proc/meminfo: memFree=685352/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1156052 CPUtime=402.12
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 733802 0 0 0 39729 483 0 0 25 0 1 0 35947271 1183797248 259483 1992294400 4194304 9819077 140735092071808 18446744073709551615 7294763 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 289013 259483 646 1374 0 287634 0
Current children cumulated CPU time (s) 402.12
Current children cumulated vsize (KiB) 1156052

[startup+462.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5750
/proc/meminfo: memFree=683492/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1155892 CPUtime=462.1
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 763749 0 0 0 45710 500 0 0 25 0 1 0 35947271 1183633408 259979 1992294400 4194304 9819077 140735092071808 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288973 259979 646 1374 0 287594 0
Current children cumulated CPU time (s) 462.1
Current children cumulated vsize (KiB) 1155892

[startup+522.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5750
/proc/meminfo: memFree=677044/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1155732 CPUtime=522.07
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 795277 0 0 0 51690 517 0 0 25 0 1 0 35947271 1183469568 262154 1992294400 4194304 9819077 140735092071808 18446744073709551615 7323995 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288933 262156 646 1374 0 287554 0
Current children cumulated CPU time (s) 522.07
Current children cumulated vsize (KiB) 1155732

[startup+582.302 s]
/proc/loadavg: 1.00 1.00 1.00 3/108 5755
/proc/meminfo: memFree=659924/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1155576 CPUtime=582.05
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 824429 0 0 0 57670 535 0 0 25 0 1 0 35947271 1183309824 262259 1992294400 4194304 9819077 140735092071808 18446744073709551615 6198346 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288894 262259 646 1374 0 287515 0
Current children cumulated CPU time (s) 582.05
Current children cumulated vsize (KiB) 1155576

[startup+642.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5757
/proc/meminfo: memFree=673324/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1155536 CPUtime=642.03
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 853354 0 0 0 63652 551 0 0 25 0 1 0 35947271 1183268864 262320 1992294400 4194304 9819077 140735092071808 18446744073709551615 7294784 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288884 262320 646 1374 0 287505 0
Current children cumulated CPU time (s) 642.03
Current children cumulated vsize (KiB) 1155536

[startup+702.301 s]

################
# More data... #
################

/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1079241 0 0 0 111504 679 0 0 25 0 1 0 35947271 1183440896 262032 1992294400 4194304 9819077 140735092071808 18446744073709551615 7304794 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288926 262032 646 1374 0 287547 0
Current children cumulated CPU time (s) 1121.83
Current children cumulated vsize (KiB) 1155704

[startup+1182.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5771
/proc/meminfo: memFree=676176/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1155768 CPUtime=1181.82
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1107098 0 0 0 117485 697 0 0 25 0 1 0 35947271 1183506432 261889 1992294400 4194304 9819077 140735092071808 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288942 261889 646 1374 0 287563 0
Current children cumulated CPU time (s) 1181.82
Current children cumulated vsize (KiB) 1155768

[startup+1242.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5773
/proc/meminfo: memFree=674192/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1155768 CPUtime=1241.79
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1134841 0 0 0 123468 711 0 0 25 0 1 0 35947271 1183506432 262086 1992294400 4194304 9819077 140735092071808 18446744073709551615 7306903 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288942 262086 646 1374 0 287563 0
Current children cumulated CPU time (s) 1241.79
Current children cumulated vsize (KiB) 1155768

[startup+1302.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5775
/proc/meminfo: memFree=673324/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1155832 CPUtime=1301.78
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1162208 0 0 0 129451 727 0 0 25 0 1 0 35947271 1183571968 262228 1992294400 4194304 9819077 140735092071808 18446744073709551615 7304794 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 288958 262228 646 1374 0 287579 0
Current children cumulated CPU time (s) 1301.78
Current children cumulated vsize (KiB) 1155832

[startup+1362.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5777
/proc/meminfo: memFree=686096/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1156968 CPUtime=1361.74
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1199283 0 0 0 135427 747 0 0 25 0 1 0 35947271 1184735232 258897 1992294400 4194304 9819077 140735092071808 18446744073709551615 5721528 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 289242 258897 654 1374 0 287863 0
Current children cumulated CPU time (s) 1361.74
Current children cumulated vsize (KiB) 1156968

[startup+1422.31 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5777
/proc/meminfo: memFree=666256/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1177940 CPUtime=1421.73
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1226663 0 0 0 141321 852 0 0 25 0 1 0 35947271 1206210560 264073 1992294400 4194304 9819077 140735092071808 18446744073709551615 6391455 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294485 264073 679 1374 0 293106 0
Current children cumulated CPU time (s) 1421.73
Current children cumulated vsize (KiB) 1177940

[startup+1482.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5779
/proc/meminfo: memFree=664520/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178008 CPUtime=1481.7
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1264212 0 0 0 147296 874 0 0 25 0 1 0 35947271 1206280192 264737 1992294400 4194304 9819077 140735092071808 18446744073709551615 7290975 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294502 264737 679 1374 0 293123 0
Current children cumulated CPU time (s) 1481.7
Current children cumulated vsize (KiB) 1178008

[startup+1542.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5781
/proc/meminfo: memFree=667248/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178036 CPUtime=1541.68
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1301236 0 0 0 153274 894 0 0 25 0 1 0 35947271 1206308864 263883 1992294400 4194304 9819077 140735092071808 18446744073709551615 6192325 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294509 263883 679 1374 0 293130 0
Current children cumulated CPU time (s) 1541.68
Current children cumulated vsize (KiB) 1178036

[startup+1602.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5783
/proc/meminfo: memFree=655344/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178068 CPUtime=1601.65
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1332872 0 0 0 159250 915 0 0 25 0 1 0 35947271 1206341632 266839 1992294400 4194304 9819077 140735092071808 18446744073709551615 6191145 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294517 266839 679 1374 0 293138 0
Current children cumulated CPU time (s) 1601.65
Current children cumulated vsize (KiB) 1178068

[startup+1662.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5785
/proc/meminfo: memFree=666504/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178072 CPUtime=1661.63
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1368819 0 0 0 165228 935 0 0 25 0 1 0 35947271 1206345728 264072 1992294400 4194304 9819077 140735092071808 18446744073709551615 7294763 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294518 264072 679 1374 0 293139 0
Current children cumulated CPU time (s) 1661.63
Current children cumulated vsize (KiB) 1178072

[startup+1722.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5785
/proc/meminfo: memFree=654352/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178096 CPUtime=1721.61
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1400750 0 0 0 171207 954 0 0 25 0 1 0 35947271 1206370304 267063 1992294400 4194304 9819077 140735092071808 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294524 267063 679 1374 0 293145 0
Current children cumulated CPU time (s) 1721.61
Current children cumulated vsize (KiB) 1178096

[startup+1782.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5787
/proc/meminfo: memFree=666752/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178136 CPUtime=1781.59
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1436829 0 0 0 177186 973 0 0 25 0 1 0 35947271 1206411264 263960 1992294400 4194304 9819077 140735092071808 18446744073709551615 6674427 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294534 263960 679 1374 0 293155 0
Current children cumulated CPU time (s) 1781.59
Current children cumulated vsize (KiB) 1178136



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1800.8 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5787
/proc/meminfo: memFree=666628/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178136 CPUtime=1800.08
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1446698 0 0 0 179031 977 0 0 25 0 1 0 35947271 1206411264 264004 1992294400 4194304 9819077 140735092071808 18446744073709551615 7306911 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294534 264004 679 1374 0 293155 0
Current children cumulated CPU time (s) 1800.08
Current children cumulated vsize (KiB) 1178136

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Sending SIGKILL to process tree (bottom up)

Sending SIGKILL to -5735

Solver just ended. Dumping a history of the last processes samples

[startup+1801.4 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 5787
/proc/meminfo: memFree=666628/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178136 CPUtime=1800.67
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1446785 0 0 0 179090 977 0 0 25 0 1 0 35947271 1206411264 264091 1992294400 4194304 9819077 140735092071808 18446744073709551615 6198302 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294534 264091 679 1374 0 293155 0
Current children cumulated CPU time (s) 1800.67
Current children cumulated vsize (KiB) 1178136

[startup+1802.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 5788
/proc/meminfo: memFree=666000/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178136 CPUtime=1801.48
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1446979 0 0 0 179170 978 0 0 25 0 1 0 35947271 1206411264 264285 1992294400 4194304 9819077 140735092071808 18446744073709551615 6198376 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294534 264285 679 1374 0 293155 0
Current children cumulated CPU time (s) 1801.48
Current children cumulated vsize (KiB) 1178136

[startup+1802.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 5788
/proc/meminfo: memFree=666000/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178136 CPUtime=1801.88
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1447116 0 0 0 179210 978 0 0 25 0 1 0 35947271 1206411264 264422 1992294400 4194304 9819077 140735092071808 18446744073709551615 6198333 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294534 264422 679 1374 0 293155 0
Current children cumulated CPU time (s) 1801.88
Current children cumulated vsize (KiB) 1178136

[startup+1802.8 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 5788
/proc/meminfo: memFree=664760/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=1178136 CPUtime=1802.08
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4202496 1447175 0 0 0 179230 978 0 0 25 0 1 0 35947271 1206411264 264481 1992294400 4194304 9819077 140735092071808 18446744073709551615 6198333 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/5735/statm: 294534 264481 679 1374 0 293155 0
Current children cumulated CPU time (s) 1802.08
Current children cumulated vsize (KiB) 1178136

[startup+1802.91 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 5788
/proc/meminfo: memFree=664760/2059040 swapFree=4140448/4192956
[pid=5735] ppid=5733 vsize=0 CPUtime=1802.19
/proc/5735/stat : 5735 (pbscip.linux.x8) R 5733 5735 4987 0 -1 4203524 1447175 0 0 0 179231 988 0 0 25 0 1 0 35947271 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 18446744073709551615 0 0 17 1 0 0 0
/proc/5735/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1802.19
Current children cumulated vsize (KiB) 0

Child ended because it received signal 9 (SIGKILL)
Real time (s): 1802.91
CPU time (s): 1802.19
CPU user time (s): 1792.31
CPU system time (s): 9.8845
CPU usage (%): 99.9602
Max. virtual memory (cumulated for all children) (KiB): 1390132

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1792.31
system time used= 9.8845
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 1447175
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 3
involuntary context switches= 15832

runsolver used 2.93355 second user time and 8.5657 second system time

The end

Launcher Data 

Begin job on node019 at 2010-06-15 19:28:29
IDJOB=2665678
IDBENCH=2953
IDSOLVER=1168
FILE ID=node019/2665678-1276622907
PBS_JOBID= 11172293
Free space on /tmp= 62372 MiB

SOLVER NAME= SCIPclp SCIP 1.2.1.2 with Clp 1.11.1 (Release Version) as LP solver
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.07.opb
COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt.clp -f BENCHNAME -t TIMEOUT -m MEMLIMIT
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-2665678-1276622907/watcher-2665678-1276622907 -o /tmp/evaluation-result-2665678-1276622907/solver-2665678-1276622907 -C 1800 -W 2000 -M 1800  HOME/pbscip.linux.x86_64.gnu.opt.clp -f HOME/instance-2665678-1276622907.opb -t 1800 -m 1800

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= 7a51facc2b0ceeb02915874508a30079
RANDOM SEED=1512376598

node019.alineos.net Linux 2.6.18-164.el5 #1 SMP Thu Sep 3 03:28:30 EDT 2009

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.264
cache size	: 2048 KB
physical id	: 0
siblings	: 1
core id		: 0
cpu cores	: 1
apicid		: 0
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr
bogomips	: 6000.52
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.264
cache size	: 2048 KB
physical id	: 3
siblings	: 1
core id		: 0
cpu cores	: 1
apicid		: 6
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5599.54
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2059040 kB
MemFree:       1723396 kB
Buffers:         63796 kB
Cached:         179516 kB
SwapCached:       6072 kB
Active:         143556 kB
Inactive:       113140 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2059040 kB
LowFree:       1723396 kB
SwapTotal:     4192956 kB
SwapFree:      4140448 kB
Dirty:           51092 kB
Writeback:           0 kB
AnonPages:       11652 kB
Mapped:          13116 kB
Slab:            57320 kB
PageTables:       4016 kB
NFS_Unstable:        0 kB
Bounce:              0 kB
CommitLimit:   5222476 kB
Committed_AS:   180984 kB
VmallocTotal: 34359738367 kB
VmallocUsed:    264948 kB
VmallocChunk: 34359471699 kB
HugePages_Total:     0
HugePages_Free:      0
HugePages_Rsvd:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 62364 MiB
End job on node019 at 2010-06-15 19:58:33