Solver Name | Answer | objective function | CPU time | Wall clock time |
---|---|---|---|---|
SCIPclp SCIP 1.2.1.2 with Clp 1.11.1 (Release Version) as LP solver | ? (TO) | 1802.18 | 1802.73 |
Name | normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/ haplotype/normalized-simp-nonunif-100_100.14.opb |
MD5SUM | e81449c340a6e16e28a331cb4252cc2b |
Bench Category | OPT-SMALLINT (optimisation, small integers) |
Best result obtained on this benchmark | SAT |
Best value of the objective obtained on this benchmark | 42 |
Best CPU time to get the best result obtained on this benchmark | 1800.59 |
Has Objective Function | YES |
Satisfiable | YES |
(Un)Satisfiability was proved | YES |
Best value of the objective function | 42 |
Optimality of the best value was proved | YES |
Number of variables | 23848 |
Total number of constraints | 1451912 |
Number of constraints which are clauses | 1447776 |
Number of constraints which are cardinality constraints (but not clauses) | 4136 |
Number of constraints which are nor clauses,nor cardinality constraints | 0 |
Minimum length of a constraint | 1 |
Maximum length of a constraint | 176 |
Number of terms in the objective function | 176 |
Biggest coefficient in the objective function | 1 |
Number of bits for the biggest coefficient in the objective function | 1 |
Sum of the numbers in the objective function | 176 |
Number of bits of the sum of numbers in the objective function | 8 |
Biggest number in a constraint | 174 |
Number of bits of the biggest number in a constraint | 8 |
Biggest sum of numbers in a constraint | 350 |
Number of bits of the biggest sum of numbers | 9 |
Number of products (including duplicates) | 0 |
Sum of products size (including duplicates) | 0 |
Number of different products | 0 |
Sum of products size | 0 |
0.00/0.00 c SCIP version 1.2.1.2 [precision: 8 byte] [memory: block] [mode: optimized] [LP solver: Clp 1.11.1] [Expressions interpreter: NONE] 0.00/0.00 c Copyright (c) 2002-2010 Konrad-Zuse-Zentrum fuer Informationstechnik Berlin (ZIB) 0.00/0.00 c 0.00/0.00 c user parameter file <scip.set> not found - using default parameters 0.00/0.00 c reading problem <HOME/instance-2665556-1276623375.opb> 25.38/25.48 c original problem has 23848 variables (23848 bin, 0 int, 0 impl, 0 cont) and 1451912 constraints 25.38/25.48 c problem read 25.38/25.48 c presolving settings loaded 29.59/29.61 c presolving: 43.16/43.29 c (round 1) 12122 del vars, 1322528 del conss, 11680 chg bounds, 168 chg sides, 336 chg coeffs, 0 upgd conss, 2964772 impls, 0 clqs 43.47/43.50 c (round 2) 12134 del vars, 1329256 del conss, 11680 chg bounds, 168 chg sides, 336 chg coeffs, 0 upgd conss, 2964772 impls, 0 clqs 43.57/43.65 c (round 3) 12136 del vars, 1329258 del conss, 11680 chg bounds, 170 chg sides, 340 chg coeffs, 0 upgd conss, 2964880 impls, 0 clqs 45.26/45.35 c (round 4) 12136 del vars, 1329258 del conss, 11680 chg bounds, 170 chg sides, 340 chg coeffs, 122654 upgd conss, 2964880 impls, 0 clqs 55.16/55.24 c (26.9s) probing: 1000/11712 (8.5%) - 0 fixings, 0 aggregations, 9765 implications, 0 bound changes 65.66/65.76 c (37.4s) probing: 2000/11712 (17.1%) - 0 fixings, 0 aggregations, 27489 implications, 0 bound changes 65.66/65.77 c (37.4s) probing: 2001/11712 (17.1%) - 0 fixings, 0 aggregations, 27538 implications, 0 bound changes 65.66/65.77 c (37.4s) probing aborted: 2000/2000 successive useless probings 65.66/65.77 c presolving (5 rounds): 65.66/65.77 c 12136 deleted vars, 1329258 deleted constraints, 11680 tightened bounds, 0 added holes, 170 changed sides, 340 changed coefficients 65.66/65.77 c 3022484 implications, 0 cliques 65.66/65.77 c presolved problem has 11712 variables (11712 bin, 0 int, 0 impl, 0 cont) and 122654 constraints 65.66/65.77 c 122654 constraints of type <logicor> 65.66/65.77 c transformed objective value is always integral (scale: 1) 65.66/65.77 c Presolving Time: 34.31 65.66/65.77 c - non default parameters ---------------------------------------------------------------------- 65.66/65.77 c # SCIP version 1.2.1.2 65.66/65.77 c 65.66/65.77 c # maximal number of intermediate conflict constraints generated in conflict graph (-1: use every intermediate constraint) 65.66/65.77 c # [type: int, range: [-1,2147483647], default: -1] 65.66/65.77 c conflict/interconss = 0 65.66/65.77 c 65.66/65.77 c # should binary conflicts be preferred? 65.66/65.77 c # [type: bool, range: {TRUE,FALSE}, default: FALSE] 65.66/65.77 c conflict/preferbinary = TRUE 65.66/65.77 c 65.66/65.77 c # maximum age an unnecessary constraint can reach before it is deleted (0: dynamic, -1: keep all constraints) 65.66/65.77 c # [type: int, range: [-1,2147483647], default: 0] 65.66/65.77 c constraints/agelimit = 1 65.66/65.77 c 65.66/65.77 c # should enforcement of pseudo solution be disabled? 65.66/65.77 c # [type: bool, range: {TRUE,FALSE}, default: FALSE] 65.66/65.77 c constraints/disableenfops = TRUE 65.66/65.77 c 65.66/65.77 c # frequency for displaying node information lines 65.66/65.77 c # [type: int, range: [-1,2147483647], default: 100] 65.66/65.77 c display/freq = 10000 65.66/65.77 c 65.66/65.77 c # maximal time in seconds to run 65.66/65.77 c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20] 65.66/65.77 c limits/time = 1774.53 65.66/65.77 c 65.66/65.77 c # maximal memory usage in MB; reported memory usage is lower than real memory usage! 65.66/65.77 c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20] 65.66/65.77 c limits/memory = 1620 65.66/65.77 c 65.66/65.77 c # frequency for solving LP at the nodes (-1: never; 0: only root LP) 65.66/65.77 c # [type: int, range: [-1,2147483647], default: 1] 65.66/65.77 c lp/solvefreq = 0 65.66/65.77 c 65.66/65.77 c # LP pricing strategy ('l'pi default, 'a'uto, 'f'ull pricing, 'p'artial, 's'teepest edge pricing, 'q'uickstart steepest edge pricing, 'd'evex pricing) 65.66/65.77 c # [type: char, range: {lafpsqd}, default: l] 65.66/65.77 c lp/pricing = a 65.66/65.77 c 65.66/65.77 c # should presolving try to simplify inequalities 65.66/65.77 c # [type: bool, range: {TRUE,FALSE}, default: FALSE] 65.66/65.77 c constraints/linear/simplifyinequalities = TRUE 65.66/65.77 c 65.66/65.77 c # should presolving try to simplify knapsacks 65.66/65.77 c # [type: bool, range: {TRUE,FALSE}, default: FALSE] 65.66/65.77 c constraints/knapsack/simplifyinequalities = TRUE 65.66/65.77 c 65.66/65.77 c # priority of node selection rule <dfs> in standard mode 65.66/65.77 c # [type: int, range: [-536870912,536870911], default: 0] 65.66/65.77 c nodeselection/dfs/stdpriority = 1000000 65.66/65.77 c 65.66/65.77 c ----------------------------------------------------------------------------------------------- 65.66/65.77 c start solving 65.66/65.79 c 65.76/65.83 o 171 65.76/65.83 c time | node | left |LP iter|LP it/n| mem |mdpt |frac |vars |cons |cols |rows |cuts |confs|strbr| dualbound | primalbound | gap 65.76/65.83 c t37.5s| 1 | 0 | 0 | - | 776M| 0 | - | 11k| 122k| 0 | 0 | 0 | 0 | 0 | -- | 1.710000e+02 | Inf 66.36/66.41 o 170 66.36/66.41 c b38.0s| 1 | 0 | 0 | - | 831M| 0 | - | 11k| 122k| 11k| 122k| 0 | 0 | 0 | -- | 1.700000e+02 | Inf 164.64/164.76 c 135s| 1 | 0 | 21386 | - | 830M| 0 | 10k| 11k| 122k| 11k| 122k| 0 | 0 | 0 | 9.000000e+00 | 1.700000e+02 |1788.89% 1063.07/1063.44 c 1031s| 1 | 0 | 71572 | - | 832M| 0 | 10k| 11k| 122k| 11k| 124k|2000 | 0 | 0 | 2.621691e+01 | 1.700000e+02 | 548.44% 1800.06/1800.61 c pressed CTRL-C 1 times (5 times for forcing termination)
ERROR: no interpretation found !
runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-2665556-1276623375/watcher-2665556-1276623375 -o /tmp/evaluation-result-2665556-1276623375/solver-2665556-1276623375 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt.clp -f HOME/instance-2665556-1276623375.opb -t 1800 -m 1800 Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB Current StackSize limit: 10240 KiB [startup+0 s] /proc/loadavg: 1.00 1.00 1.00 3/106 10548 /proc/meminfo: memFree=1449184/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=9288 CPUtime=0 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1110 0 0 0 0 0 0 0 18 0 1 0 3630486 9510912 1031 1992294400 4194304 9819077 140736721835136 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0 /proc/10548/statm: 2322 1041 371 1374 0 943 0 [startup+0.0415351 s] /proc/loadavg: 1.00 1.00 1.00 3/106 10548 /proc/meminfo: memFree=1449184/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=14084 CPUtime=0.03 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 2452 0 0 0 3 0 0 0 18 0 1 0 3630486 14422016 2373 1992294400 4194304 9819077 140736721835136 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0 /proc/10548/statm: 3521 2373 388 1374 0 2142 0 Current children cumulated CPU time (s) 0.03 Current children cumulated vsize (KiB) 14084 [startup+0.100544 s] /proc/loadavg: 1.00 1.00 1.00 3/106 10548 /proc/meminfo: memFree=1449184/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=19768 CPUtime=0.09 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 3883 0 0 0 9 0 0 0 21 0 1 0 3630486 20242432 3804 1992294400 4194304 9819077 140736721835136 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0 /proc/10548/statm: 4942 3804 388 1374 0 3563 0 Current children cumulated CPU time (s) 0.09 Current children cumulated vsize (KiB) 19768 [startup+0.300571 s] /proc/loadavg: 1.00 1.00 1.00 3/106 10548 /proc/meminfo: memFree=1449184/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=24668 CPUtime=0.29 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 5109 0 0 0 28 1 0 0 21 0 1 0 3630486 25260032 5030 1992294400 4194304 9819077 140736721835136 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0 /proc/10548/statm: 6167 5030 388 1374 0 4788 0 Current children cumulated CPU time (s) 0.29 Current children cumulated vsize (KiB) 24668 [startup+0.700636 s] /proc/loadavg: 1.00 1.00 1.00 3/106 10548 /proc/meminfo: memFree=1449184/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=32884 CPUtime=0.69 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 7124 0 0 0 67 2 0 0 22 0 1 0 3630486 33673216 7045 1992294400 4194304 9819077 140736721835136 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0 /proc/10548/statm: 8221 7045 388 1374 0 6842 0 Current children cumulated CPU time (s) 0.69 Current children cumulated vsize (KiB) 32884 [startup+1.50074 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10549 /proc/meminfo: memFree=1418052/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=48852 CPUtime=1.49 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 11143 0 0 0 146 3 0 0 25 0 1 0 3630486 50024448 11064 1992294400 4194304 9819077 140736721835136 18446744073709551615 5902432 0 0 4096 0 0 0 0 17 1 0 0 0 /proc/10548/statm: 12213 11064 388 1374 0 10834 0 Current children cumulated CPU time (s) 1.49 Current children cumulated vsize (KiB) 48852 [startup+3.10197 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10549 /proc/meminfo: memFree=1395360/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=82420 CPUtime=3.1 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 19501 0 0 0 303 7 0 0 25 0 1 0 3630486 84398080 19422 1992294400 4194304 9819077 140736721835136 18446744073709551615 4207135 0 0 4096 0 0 0 0 17 1 0 0 0 /proc/10548/statm: 20605 19422 388 1374 0 19226 0 Current children cumulated CPU time (s) 3.1 Current children cumulated vsize (KiB) 82420 [startup+6.30143 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10549 /proc/meminfo: memFree=1326664/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=147656 CPUtime=6.29 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 35776 0 0 0 616 13 0 0 25 0 1 0 3630486 151199744 35697 1992294400 4194304 9819077 140736721835136 18446744073709551615 8610842 0 0 4096 0 0 0 0 17 1 0 0 0 /proc/10548/statm: 36914 35697 388 1374 0 35535 0 Current children cumulated CPU time (s) 6.29 Current children cumulated vsize (KiB) 147656 [startup+12.7013 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10549 /proc/meminfo: memFree=1189892/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=282096 CPUtime=12.69 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 69252 0 0 0 1242 27 0 0 25 0 1 0 3630486 288866304 69173 1992294400 4194304 9819077 140736721835136 18446744073709551615 8081516 0 0 4096 0 0 0 0 17 1 0 0 0 /proc/10548/statm: 70524 69173 388 1374 0 69145 0 Current children cumulated CPU time (s) 12.69 Current children cumulated vsize (KiB) 282096 [startup+25.5012 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10551 /proc/meminfo: memFree=917712/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=552836 CPUtime=25.48 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 136955 0 0 0 2495 53 0 0 25 0 1 0 3630486 566104064 136522 1992294400 4194304 9819077 140736721835136 18446744073709551615 4700019 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 138209 136522 427 1374 0 136830 0 Current children cumulated CPU time (s) 25.48 Current children cumulated vsize (KiB) 552836 [startup+51.1008 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10551 /proc/meminfo: memFree=507888/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1040948 CPUtime=51.06 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 418657 0 0 0 4774 332 0 0 25 0 1 0 3630486 1065930752 253769 1992294400 4194304 9819077 140736721835136 18446744073709551615 4999837 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 260237 253769 531 1374 0 258858 0 Current children cumulated CPU time (s) 51.06 Current children cumulated vsize (KiB) 1040948 [startup+102.308 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10553 /proc/meminfo: memFree=411044/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1228344 CPUtime=102.25 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 541057 0 0 0 9834 391 0 0 25 0 1 0 3630486 1257824256 278183 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 307086 278183 636 1374 0 305707 0 Current children cumulated CPU time (s) 102.25 Current children cumulated vsize (KiB) 1228344 [startup+162.301 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10553 /proc/meminfo: memFree=413152/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1229280 CPUtime=162.23 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 609470 0 0 0 15794 429 0 0 25 0 1 0 3630486 1258782720 277680 1992294400 4194304 9819077 140736721835136 18446744073709551615 6198333 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 307320 277680 636 1374 0 305941 0 Current children cumulated CPU time (s) 162.23 Current children cumulated vsize (KiB) 1229280 [startup+222.3 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10555 /proc/meminfo: memFree=414268/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1233004 CPUtime=222.22 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 663647 0 0 0 21764 458 0 0 25 0 1 0 3630486 1262596096 278065 1992294400 4194304 9819077 140736721835136 18446744073709551615 7293542 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308251 278065 652 1374 0 306872 0 Current children cumulated CPU time (s) 222.22 Current children cumulated vsize (KiB) 1233004 [startup+282.302 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10557 /proc/meminfo: memFree=399636/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1232968 CPUtime=282.2 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 701436 0 0 0 27739 481 0 0 25 0 1 0 3630486 1262559232 281048 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308242 281048 652 1374 0 306863 0 Current children cumulated CPU time (s) 282.2 Current children cumulated vsize (KiB) 1232968 [startup+342.301 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10559 /proc/meminfo: memFree=398024/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1233004 CPUtime=342.18 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 737475 0 0 0 33718 500 0 0 25 0 1 0 3630486 1262596096 281410 1992294400 4194304 9819077 140736721835136 18446744073709551615 6191145 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308251 281410 652 1374 0 306872 0 Current children cumulated CPU time (s) 342.18 Current children cumulated vsize (KiB) 1233004 [startup+402.301 s] /proc/loadavg: 1.07 1.02 1.00 2/107 10561 /proc/meminfo: memFree=408688/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1232940 CPUtime=402.17 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 779978 0 0 0 39695 522 0 0 25 0 1 0 3630486 1262530560 279048 1992294400 4194304 9819077 140736721835136 18446744073709551615 7293496 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308235 279048 652 1374 0 306856 0 Current children cumulated CPU time (s) 402.17 Current children cumulated vsize (KiB) 1232940 [startup+462.301 s] /proc/loadavg: 1.02 1.01 1.00 2/107 10561 /proc/meminfo: memFree=401496/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1232876 CPUtime=462.15 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 817946 0 0 0 45671 544 0 0 25 0 1 0 3630486 1262465024 280783 1992294400 4194304 9819077 140736721835136 18446744073709551615 6191141 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308219 280783 652 1374 0 306840 0 Current children cumulated CPU time (s) 462.15 Current children cumulated vsize (KiB) 1232876 [startup+522.301 s] /proc/loadavg: 1.01 1.00 1.00 2/107 10563 /proc/meminfo: memFree=399264/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1232812 CPUtime=522.13 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 854823 0 0 0 51647 566 0 0 25 0 1 0 3630486 1262399488 281130 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308203 281130 652 1374 0 306824 0 Current children cumulated CPU time (s) 522.13 Current children cumulated vsize (KiB) 1232812 [startup+582.301 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10565 /proc/meminfo: memFree=397528/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1232772 CPUtime=582.11 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 891229 0 0 0 57624 587 0 0 25 0 1 0 3630486 1262358528 281533 1992294400 4194304 9819077 140736721835136 18446744073709551615 7296045 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308193 281533 652 1374 0 306814 0 Current children cumulated CPU time (s) 582.11 Current children cumulated vsize (KiB) 1232772 [startup+642.301 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10567 /proc/meminfo: memFree=410176/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1232552 CPUtime=642.1 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 933360 0 0 0 63601 609 0 0 25 0 1 0 3630486 1262133248 278333 1992294400 4194304 9819077 140736721835136 18446744073709551615 7312541 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308138 278333 652 1374 0 306759 0 Current children cumulated CPU time (s) 642.1 Current children cumulated vsize (KiB) 1232552 [startup+702.302 s] ################ # More data... # ################ /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1201202 0 0 0 105436 761 0 0 25 0 1 0 3630486 1261744128 278390 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308043 278390 652 1374 0 306664 0 Current children cumulated CPU time (s) 1061.97 Current children cumulated vsize (KiB) 1232172 [startup+1122.3 s] /proc/loadavg: 1.04 1.03 1.00 2/107 10579 /proc/meminfo: memFree=410672/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1232172 CPUtime=1121.95 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1207558 0 0 0 111426 769 0 0 25 0 1 0 3630486 1261744128 278025 1992294400 4194304 9819077 140736721835136 18446744073709551615 6043636 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308043 278025 652 1374 0 306664 0 Current children cumulated CPU time (s) 1121.95 Current children cumulated vsize (KiB) 1232172 [startup+1182.3 s] /proc/loadavg: 1.01 1.02 1.00 2/107 10581 /proc/meminfo: memFree=410672/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1232172 CPUtime=1181.93 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1207681 0 0 0 117420 773 0 0 25 0 1 0 3630486 1261744128 278026 1992294400 4194304 9819077 140736721835136 18446744073709551615 6054173 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308043 278026 653 1374 0 306664 0 Current children cumulated CPU time (s) 1181.93 Current children cumulated vsize (KiB) 1232172 [startup+1242.3 s] /proc/loadavg: 1.00 1.02 1.00 2/107 10583 /proc/meminfo: memFree=410672/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1232172 CPUtime=1241.91 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1207682 0 0 0 123412 779 0 0 25 0 1 0 3630486 1261744128 278027 1992294400 4194304 9819077 140736721835136 18446744073709551615 5721528 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 308043 278027 654 1374 0 306664 0 Current children cumulated CPU time (s) 1241.91 Current children cumulated vsize (KiB) 1232172 [startup+1302.3 s] /proc/loadavg: 1.00 1.01 1.00 2/107 10585 /proc/meminfo: memFree=385128/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1249956 CPUtime=1301.9 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1229255 0 0 0 129303 887 0 0 25 0 1 0 3630486 1279954944 284519 1992294400 4194304 9819077 140736721835136 18446744073709551615 6198302 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312489 284519 682 1374 0 311110 0 Current children cumulated CPU time (s) 1301.9 Current children cumulated vsize (KiB) 1249956 [startup+1362.3 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10585 /proc/meminfo: memFree=393188/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1249796 CPUtime=1361.87 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1262826 0 0 0 135280 907 0 0 25 0 1 0 3630486 1279791104 282735 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290952 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312449 282735 682 1374 0 311070 0 Current children cumulated CPU time (s) 1361.87 Current children cumulated vsize (KiB) 1249796 [startup+1422.31 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10587 /proc/meminfo: memFree=394924/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1249576 CPUtime=1421.86 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1297927 0 0 0 141257 929 0 0 25 0 1 0 3630486 1279565824 282056 1992294400 4194304 9819077 140736721835136 18446744073709551615 6198314 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312394 282056 682 1374 0 311015 0 Current children cumulated CPU time (s) 1421.86 Current children cumulated vsize (KiB) 1249576 [startup+1482.3 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10589 /proc/meminfo: memFree=383888/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1249668 CPUtime=1481.85 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1328084 0 0 0 147238 947 0 0 25 0 1 0 3630486 1279660032 284856 1992294400 4194304 9819077 140736721835136 18446744073709551615 7304779 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312417 284856 682 1374 0 311038 0 Current children cumulated CPU time (s) 1481.85 Current children cumulated vsize (KiB) 1249668 [startup+1542.3 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10600 /proc/meminfo: memFree=382028/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1249508 CPUtime=1541.82 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1356248 0 0 0 153219 963 0 0 25 0 1 0 3630486 1279496192 285297 1992294400 4194304 9819077 140736721835136 18446744073709551615 6191175 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312377 285297 682 1374 0 310998 0 Current children cumulated CPU time (s) 1541.82 Current children cumulated vsize (KiB) 1249508 [startup+1602.3 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10602 /proc/meminfo: memFree=391452/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1249412 CPUtime=1601.81 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1390821 0 0 0 159199 982 0 0 25 0 1 0 3630486 1279397888 283285 1992294400 4194304 9819077 140736721835136 18446744073709551615 6191145 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312353 283285 682 1374 0 310974 0 Current children cumulated CPU time (s) 1601.81 Current children cumulated vsize (KiB) 1249412 [startup+1662.3 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10602 /proc/meminfo: memFree=384384/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1248996 CPUtime=1661.79 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1419715 0 0 0 165180 999 0 0 25 0 1 0 3630486 1278971904 284729 1992294400 4194304 9819077 140736721835136 18446744073709551615 7304801 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312249 284729 682 1374 0 310870 0 Current children cumulated CPU time (s) 1661.79 Current children cumulated vsize (KiB) 1248996 [startup+1722.3 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10604 /proc/meminfo: memFree=383888/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1249064 CPUtime=1721.77 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1447383 0 0 0 171164 1013 0 0 25 0 1 0 3630486 1279041536 284882 1992294400 4194304 9819077 140736721835136 18446744073709551615 7309084 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312266 284882 682 1374 0 310887 0 Current children cumulated CPU time (s) 1721.77 Current children cumulated vsize (KiB) 1249064 [startup+1782.3 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10606 /proc/meminfo: memFree=383392/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1248932 CPUtime=1781.75 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1474631 0 0 0 177146 1029 0 0 25 0 1 0 3630486 1278906368 284965 1992294400 4194304 9819077 140736721835136 18446744073709551615 7290944 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312233 284965 682 1374 0 310854 0 Current children cumulated CPU time (s) 1781.75 Current children cumulated vsize (KiB) 1248932 Maximum CPU time exceeded: sending SIGTERM then SIGKILL [startup+1800.6 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10606 /proc/meminfo: memFree=383764/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1248768 CPUtime=1800.06 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1483605 0 0 0 178973 1033 0 0 25 0 1 0 3630486 1278738432 284835 1992294400 4194304 9819077 140736721835136 18446744073709551615 6674427 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312192 284835 682 1374 0 310813 0 Current children cumulated CPU time (s) 1800.06 Current children cumulated vsize (KiB) 1248768 Sending SIGTERM to process tree (bottom up) Sleeping 2 seconds Sending SIGKILL to process tree (bottom up) Sending SIGKILL to -10548 Solver just ended. Dumping a history of the last processes samples [startup+1801.4 s] /proc/loadavg: 1.00 1.00 1.00 2/107 10606 /proc/meminfo: memFree=383764/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1248768 CPUtime=1800.84 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1483660 0 0 0 179051 1033 0 0 25 0 1 0 3630486 1278738432 284890 1992294400 4194304 9819077 140736721835136 18446744073709551615 7309043 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312192 284890 682 1374 0 310813 0 Current children cumulated CPU time (s) 1800.84 Current children cumulated vsize (KiB) 1248768 [startup+1802.2 s] /proc/loadavg: 1.00 1.00 1.00 2/108 10607 /proc/meminfo: memFree=383384/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1248768 CPUtime=1801.64 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1483715 0 0 0 179131 1033 0 0 25 0 1 0 3630486 1278738432 284945 1992294400 4194304 9819077 140736721835136 18446744073709551615 6191145 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312192 284945 682 1374 0 310813 0 Current children cumulated CPU time (s) 1801.64 Current children cumulated vsize (KiB) 1248768 [startup+1802.6 s] /proc/loadavg: 1.00 1.00 1.00 2/108 10607 /proc/meminfo: memFree=383384/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=1248768 CPUtime=1802.04 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4202496 1483745 0 0 0 179171 1033 0 0 25 0 1 0 3630486 1278738432 284975 1992294400 4194304 9819077 140736721835136 18446744073709551615 6192325 0 0 4096 16384 0 0 0 17 1 0 0 0 /proc/10548/statm: 312192 284975 682 1374 0 310813 0 Current children cumulated CPU time (s) 1802.04 Current children cumulated vsize (KiB) 1248768 [startup+1802.7 s] /proc/loadavg: 1.00 1.00 1.00 2/108 10607 /proc/meminfo: memFree=383384/2059040 swapFree=4192956/4192956 [pid=10548] ppid=10546 vsize=0 CPUtime=1802.14 /proc/10548/stat : 10548 (pbscip.linux.x8) R 10546 10548 10120 0 -1 4203524 1483747 0 0 0 179173 1041 0 0 25 0 1 0 3630486 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 18446744073709551615 0 0 17 1 0 0 0 /proc/10548/statm: 0 0 0 0 0 0 0 Current children cumulated CPU time (s) 1802.14 Current children cumulated vsize (KiB) 0 Child ended because it received signal 9 (SIGKILL) Real time (s): 1802.73 CPU time (s): 1802.18 CPU user time (s): 1791.73 CPU system time (s): 10.4454 CPU usage (%): 99.9696 Max. virtual memory (cumulated for all children) (KiB): 1538116 getrusage(RUSAGE_CHILDREN,...) data: user time used= 1791.73 system time used= 10.4454 maximum resident set size= 0 integral shared memory size= 0 integral unshared data size= 0 integral unshared stack size= 0 page reclaims= 1483747 page faults= 0 swaps= 0 block input operations= 0 block output operations= 0 messages sent= 0 messages received= 0 signals received= 0 voluntary context switches= 2 involuntary context switches= 21843 runsolver used 2.81757 second user time and 8.68068 second system time The end
Begin job on node039 at 2010-06-15 19:36:17 IDJOB=2665556 IDBENCH=2955 IDSOLVER=1168 FILE ID=node039/2665556-1276623375 PBS_JOBID= 11172326 Free space on /tmp= 62500 MiB SOLVER NAME= SCIPclp SCIP 1.2.1.2 with Clp 1.11.1 (Release Version) as LP solver BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.14.opb COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt.clp -f BENCHNAME -t TIMEOUT -m MEMLIMIT RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-2665556-1276623375/watcher-2665556-1276623375 -o /tmp/evaluation-result-2665556-1276623375/solver-2665556-1276623375 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt.clp -f HOME/instance-2665556-1276623375.opb -t 1800 -m 1800 TIME LIMIT= 1800 seconds MEMORY LIMIT= 1800 MiB MAX NB THREAD= 0 MD5SUM BENCH= e81449c340a6e16e28a331cb4252cc2b RANDOM SEED=1783417476 node039.alineos.net Linux 2.6.18-164.el5 #1 SMP Thu Sep 3 03:28:30 EDT 2009 /proc/cpuinfo: processor : 0 vendor_id : GenuineIntel cpu family : 15 model : 4 model name : Intel(R) Xeon(TM) CPU 3.00GHz stepping : 3 cpu MHz : 3000.267 cache size : 2048 KB physical id : 0 siblings : 1 core id : 0 cpu cores : 1 apicid : 0 fpu : yes fpu_exception : yes cpuid level : 5 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr bogomips : 6000.53 clflush size : 64 cache_alignment : 128 address sizes : 36 bits physical, 48 bits virtual power management: processor : 1 vendor_id : GenuineIntel cpu family : 15 model : 4 model name : Intel(R) Xeon(TM) CPU 3.00GHz stepping : 3 cpu MHz : 3000.267 cache size : 2048 KB physical id : 3 siblings : 1 core id : 0 cpu cores : 1 apicid : 6 fpu : yes fpu_exception : yes cpuid level : 5 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr bogomips : 5599.45 clflush size : 64 cache_alignment : 128 address sizes : 36 bits physical, 48 bits virtual power management: /proc/meminfo: MemTotal: 2059040 kB MemFree: 1449340 kB Buffers: 76356 kB Cached: 401616 kB SwapCached: 0 kB Active: 252088 kB Inactive: 285352 kB HighTotal: 0 kB HighFree: 0 kB LowTotal: 2059040 kB LowFree: 1449340 kB SwapTotal: 4192956 kB SwapFree: 4192956 kB Dirty: 57768 kB Writeback: 64 kB AnonPages: 59412 kB Mapped: 15404 kB Slab: 50072 kB PageTables: 3972 kB NFS_Unstable: 0 kB Bounce: 0 kB CommitLimit: 5222476 kB Committed_AS: 181532 kB VmallocTotal: 34359738367 kB VmallocUsed: 264948 kB VmallocChunk: 34359471699 kB HugePages_Total: 0 HugePages_Free: 0 HugePages_Rsvd: 0 Hugepagesize: 2048 kB Free space on /tmp at the end= 62496 MiB End job on node039 at 2010-06-15 20:06:20