Trace number 2665555

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjective functionCPU timeWall clock time
SCIPclp SCIP 1.2.1.2 with Clp 1.11.1 (Release Version) as LP solver? (TO) 1802.18 1802.91

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-nonunif-100_100.02.opb
MD5SUM88c0da0b31a99941a4f2c09165ead688
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkSAT
Best value of the objective obtained on this benchmark44
Best CPU time to get the best result obtained on this benchmark1800.55
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 44
Optimality of the best value was proved YES
Number of variables21566
Total number of constraints1314050
Number of constraints which are clauses1310032
Number of constraints which are cardinality constraints (but not clauses)4018
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint164
Number of terms in the objective function 164
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 164
Number of bits of the sum of numbers in the objective function 8
Biggest number in a constraint 162
Number of bits of the biggest number in a constraint 8
Biggest sum of numbers in a constraint 326
Number of bits of the biggest sum of numbers9
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data 

0.00/0.00	c SCIP version 1.2.1.2 [precision: 8 byte] [memory: block] [mode: optimized] [LP solver: Clp 1.11.1] [Expressions interpreter: NONE]
0.00/0.00	c Copyright (c) 2002-2010 Konrad-Zuse-Zentrum fuer Informationstechnik Berlin (ZIB)
0.00/0.00	c 
0.00/0.00	c user parameter file <scip.set> not found - using default parameters
0.00/0.00	c reading problem <HOME/instance-2665555-1276623495.opb>
22.99/23.01	c original problem has 21566 variables (21566 bin, 0 int, 0 impl, 0 cont) and 1314050 constraints
22.99/23.01	c problem read
22.99/23.01	c presolving settings loaded
26.68/26.75	c presolving:
39.59/39.62	c (round 1) 10314 del vars, 1190426 del conss, 9898 chg bounds, 160 chg sides, 320 chg coeffs, 0 upgd conss, 3078960 impls, 0 clqs
39.78/39.83	c (round 2) 10324 del vars, 1197874 del conss, 9898 chg bounds, 160 chg sides, 320 chg coeffs, 0 upgd conss, 3078960 impls, 0 clqs
39.87/39.97	c (round 3) 10326 del vars, 1197876 del conss, 9898 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 3079076 impls, 0 clqs
41.58/41.61	c (round 4) 10326 del vars, 1197876 del conss, 9898 chg bounds, 162 chg sides, 324 chg coeffs, 116174 upgd conss, 3079076 impls, 0 clqs
51.28/51.36	c    (25.8s) probing: 1000/11240 (8.9%) - 0 fixings, 0 aggregations, 3348 implications, 0 bound changes
62.47/62.55	c    (37.0s) probing: 2000/11240 (17.8%) - 0 fixings, 0 aggregations, 13007 implications, 0 bound changes
62.47/62.56	c    (37.0s) probing: 2001/11240 (17.8%) - 0 fixings, 0 aggregations, 13012 implications, 0 bound changes
62.47/62.56	c    (37.0s) probing aborted: 2000/2000 successive useless probings
62.47/62.56	c presolving (5 rounds):
62.47/62.56	c  10326 deleted vars, 1197876 deleted constraints, 9898 tightened bounds, 0 added holes, 162 changed sides, 324 changed coefficients
62.47/62.56	c  3107842 implications, 0 cliques
62.47/62.56	c presolved problem has 11240 variables (11240 bin, 0 int, 0 impl, 0 cont) and 116174 constraints
62.47/62.56	c  116174 constraints of type <logicor>
62.47/62.56	c transformed objective value is always integral (scale: 1)
62.47/62.56	c Presolving Time: 34.15
62.47/62.56	c - non default parameters ----------------------------------------------------------------------
62.47/62.56	c # SCIP version 1.2.1.2
62.47/62.56	c 
62.47/62.56	c # maximal number of intermediate conflict constraints generated in conflict graph (-1: use every intermediate constraint)
62.47/62.56	c # [type: int, range: [-1,2147483647], default: -1]
62.47/62.56	c conflict/interconss = 0
62.47/62.56	c 
62.47/62.56	c # should binary conflicts be preferred?
62.47/62.56	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
62.47/62.56	c conflict/preferbinary = TRUE
62.47/62.56	c 
62.47/62.56	c # maximum age an unnecessary constraint can reach before it is deleted (0: dynamic, -1: keep all constraints)
62.47/62.56	c # [type: int, range: [-1,2147483647], default: 0]
62.47/62.56	c constraints/agelimit = 1
62.47/62.56	c 
62.47/62.56	c # should enforcement of pseudo solution be disabled?
62.47/62.56	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
62.47/62.56	c constraints/disableenfops = TRUE
62.47/62.56	c 
62.47/62.56	c # frequency for displaying node information lines
62.47/62.56	c # [type: int, range: [-1,2147483647], default: 100]
62.47/62.56	c display/freq = 10000
62.47/62.56	c 
62.47/62.56	c # maximal time in seconds to run
62.47/62.56	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
62.47/62.56	c limits/time = 1777
62.47/62.56	c 
62.47/62.56	c # maximal memory usage in MB; reported memory usage is lower than real memory usage!
62.47/62.56	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
62.47/62.56	c limits/memory = 1620
62.47/62.56	c 
62.47/62.56	c # frequency for solving LP at the nodes (-1: never; 0: only root LP)
62.47/62.56	c # [type: int, range: [-1,2147483647], default: 1]
62.47/62.56	c lp/solvefreq = 0
62.47/62.56	c 
62.47/62.56	c # LP pricing strategy ('l'pi default, 'a'uto, 'f'ull pricing, 'p'artial, 's'teepest edge pricing, 'q'uickstart steepest edge pricing, 'd'evex pricing)
62.47/62.56	c # [type: char, range: {lafpsqd}, default: l]
62.47/62.56	c lp/pricing = a
62.47/62.56	c 
62.47/62.56	c # should presolving try to simplify inequalities
62.47/62.56	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
62.47/62.56	c constraints/linear/simplifyinequalities = TRUE
62.47/62.56	c 
62.47/62.56	c # should presolving try to simplify knapsacks
62.47/62.56	c # [type: bool, range: {TRUE,FALSE}, default: FALSE]
62.47/62.56	c constraints/knapsack/simplifyinequalities = TRUE
62.47/62.56	c 
62.47/62.56	c # priority of node selection rule <dfs> in standard mode
62.47/62.56	c # [type: int, range: [-536870912,536870911], default: 0]
62.47/62.56	c nodeselection/dfs/stdpriority = 1000000
62.47/62.56	c 
62.47/62.56	c -----------------------------------------------------------------------------------------------
62.47/62.56	c start solving
62.47/62.58	c 
62.57/62.61	o 161
62.57/62.61	c  time | node  | left  |LP iter|LP it/n| mem |mdpt |frac |vars |cons |cols |rows |cuts |confs|strbr|  dualbound   | primalbound  |  gap   
62.57/62.61	c t37.0s|     1 |     0 |     0 |     - | 713M|   0 |   - |  11k| 116k|   0 |   0 |   0 |   0 |   0 |      --      | 1.610000e+02 |    Inf 
63.07/63.16	o 160
63.07/63.16	c b37.5s|     1 |     0 |     0 |     - | 765M|   0 |   - |  11k| 116k|  11k| 116k|   0 |   0 |   0 |      --      | 1.600000e+02 |    Inf 
148.45/148.59	c   122s|     1 |     0 | 19913 |     - | 765M|   0 |  10k|  11k| 116k|  11k| 116k|   0 |   0 |   0 | 7.000000e+00 | 1.600000e+02 |2185.71%
1129.75/1130.30	c  1100s|     1 |     0 | 68788 |     - | 767M|   0 |  10k|  11k| 116k|  11k| 118k|2000 |   0 |   0 | 2.227250e+01 | 1.600000e+02 | 618.37%
1800.07/1800.80	c pressed CTRL-C 1 times (5 times for forcing termination)

Verifier Data 

ERROR: no interpretation found !

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-2665555-1276623495/watcher-2665555-1276623495 -o /tmp/evaluation-result-2665555-1276623495/solver-2665555-1276623495 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt.clp -f HOME/instance-2665555-1276623495.opb -t 1800 -m 1800 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 1.02 1.02 1.00 3/106 10540
/proc/meminfo: memFree=1443452/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=9288 CPUtime=0
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1047 0 0 0 0 0 0 0 21 0 1 0 3642056 9510912 967 1992294400 4194304 9819077 140735084799152 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10540/statm: 2322 978 371 1374 0 943 0

[startup+0.0240521 s]
/proc/loadavg: 1.02 1.02 1.00 3/106 10540
/proc/meminfo: memFree=1443452/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=12228 CPUtime=0.01
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 2005 0 0 0 1 0 0 0 21 0 1 0 3642056 12521472 1925 1992294400 4194304 9819077 140735084799152 18446744073709551615 8584085 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10540/statm: 3057 1925 388 1374 0 1678 0
Current children cumulated CPU time (s) 0.01
Current children cumulated vsize (KiB) 12228

[startup+0.101067 s]
/proc/loadavg: 1.02 1.02 1.00 3/106 10540
/proc/meminfo: memFree=1443452/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=19632 CPUtime=0.09
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 3856 0 0 0 8 1 0 0 21 0 1 0 3642056 20103168 3776 1992294400 4194304 9819077 140735084799152 18446744073709551615 5648492 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10540/statm: 4908 3776 388 1374 0 3529 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 19632

[startup+0.301103 s]
/proc/loadavg: 1.02 1.02 1.00 3/106 10540
/proc/meminfo: memFree=1443452/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=24660 CPUtime=0.29
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 5109 0 0 0 28 1 0 0 21 0 1 0 3642056 25251840 5029 1992294400 4194304 9819077 140735084799152 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10540/statm: 6165 5029 388 1374 0 4786 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 24660

[startup+0.701176 s]
/proc/loadavg: 1.02 1.02 1.00 3/106 10540
/proc/meminfo: memFree=1443452/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=32668 CPUtime=0.69
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 7105 0 0 0 67 2 0 0 22 0 1 0 3642056 33452032 7025 1992294400 4194304 9819077 140735084799152 18446744073709551615 6180954 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10540/statm: 8167 7025 388 1374 0 6788 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 32668

[startup+1.50032 s]
/proc/loadavg: 1.02 1.02 1.00 2/107 10541
/proc/meminfo: memFree=1411700/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=48848 CPUtime=1.49
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 11143 0 0 0 146 3 0 0 25 0 1 0 3642056 50020352 11063 1992294400 4194304 9819077 140735084799152 18446744073709551615 4240584 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10540/statm: 12212 11063 388 1374 0 10833 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 48848

[startup+3.10061 s]
/proc/loadavg: 1.02 1.02 1.00 2/107 10541
/proc/meminfo: memFree=1389628/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=82412 CPUtime=3.09
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 19502 0 0 0 303 6 0 0 25 0 1 0 3642056 84389888 19422 1992294400 4194304 9819077 140735084799152 18446744073709551615 5648408 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10540/statm: 20603 19422 388 1374 0 19224 0
Current children cumulated CPU time (s) 3.09
Current children cumulated vsize (KiB) 82412

[startup+6.30019 s]
/proc/loadavg: 1.01 1.02 1.00 2/107 10541
/proc/meminfo: memFree=1321180/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=148804 CPUtime=6.28
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 36034 0 0 0 615 13 0 0 25 0 1 0 3642056 152375296 35954 1992294400 4194304 9819077 140735084799152 18446744073709551615 8610926 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10540/statm: 37201 35954 388 1374 0 35822 0
Current children cumulated CPU time (s) 6.28
Current children cumulated vsize (KiB) 148804

[startup+12.7014 s]
/proc/loadavg: 1.01 1.02 1.00 2/107 10541
/proc/meminfo: memFree=1185648/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=282412 CPUtime=12.69
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 69301 0 0 0 1242 27 0 0 25 0 1 0 3642056 289189888 69221 1992294400 4194304 9819077 140735084799152 18446744073709551615 8675093 0 0 4096 0 0 0 0 17 1 0 0 0
/proc/10540/statm: 70603 69221 388 1374 0 69224 0
Current children cumulated CPU time (s) 12.69
Current children cumulated vsize (KiB) 282412

[startup+25.5017 s]
/proc/loadavg: 1.01 1.02 1.00 2/107 10541
/proc/meminfo: memFree=357700/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1148356 CPUtime=25.49
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 288454 0 0 0 2441 108 0 0 25 0 1 0 3642056 1175916544 283935 1992294400 4194304 9819077 140735084799152 18446744073709551615 4906555 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 287089 283935 438 1374 0 285710 0
Current children cumulated CPU time (s) 25.49
Current children cumulated vsize (KiB) 1148356

[startup+51.1013 s]
/proc/loadavg: 1.00 1.02 1.00 2/107 10541
/proc/meminfo: memFree=498688/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=962220 CPUtime=51.08
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 391305 0 0 0 4804 304 0 0 25 0 1 0 3642056 985313280 236706 1992294400 4194304 9819077 140735084799152 18446744073709551615 4660129 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 240555 236706 518 1374 0 239176 0
Current children cumulated CPU time (s) 51.08
Current children cumulated vsize (KiB) 962220

[startup+102.309 s]
/proc/loadavg: 1.00 1.01 1.00 2/107 10543
/proc/meminfo: memFree=400232/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1138940 CPUtime=102.26
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 512562 0 0 0 9865 361 0 0 25 0 1 0 3642056 1166274560 261415 1992294400 4194304 9819077 140735084799152 18446744073709551615 6192309 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 284735 261415 636 1374 0 283356 0
Current children cumulated CPU time (s) 102.26
Current children cumulated vsize (KiB) 1138940

[startup+162.301 s]
/proc/loadavg: 1.00 1.01 1.00 2/107 10545
/proc/meminfo: memFree=400976/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1140556 CPUtime=162.24
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 587752 0 0 0 15820 404 0 0 25 0 1 0 3642056 1167929344 261225 1992294400 4194304 9819077 140735084799152 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 285139 261225 646 1374 0 283760 0
Current children cumulated CPU time (s) 162.24
Current children cumulated vsize (KiB) 1140556

[startup+222.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10547
/proc/meminfo: memFree=409408/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1140592 CPUtime=222.2
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 627369 0 0 0 21795 425 0 0 25 0 1 0 3642056 1167966208 259167 1992294400 4194304 9819077 140735084799152 18446744073709551615 7292302 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 285148 259167 646 1374 0 283769 0
Current children cumulated CPU time (s) 222.2
Current children cumulated vsize (KiB) 1140592

[startup+282.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10547
/proc/meminfo: memFree=409036/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1140620 CPUtime=282.18
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 662313 0 0 0 27773 445 0 0 25 0 1 0 3642056 1167994880 259387 1992294400 4194304 9819077 140735084799152 18446744073709551615 7290975 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 285155 259387 646 1374 0 283776 0
Current children cumulated CPU time (s) 282.18
Current children cumulated vsize (KiB) 1140620

[startup+342.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10549
/proc/meminfo: memFree=407052/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1140616 CPUtime=342.16
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 697457 0 0 0 33751 465 0 0 25 0 1 0 3642056 1167990784 259856 1992294400 4194304 9819077 140735084799152 18446744073709551615 6198302 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 285154 259856 646 1374 0 283775 0
Current children cumulated CPU time (s) 342.16
Current children cumulated vsize (KiB) 1140616

[startup+402.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10551
/proc/meminfo: memFree=407424/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1140528 CPUtime=402.13
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 732346 0 0 0 39729 484 0 0 25 0 1 0 3642056 1167900672 260143 1992294400 4194304 9819077 140735084799152 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 285132 260143 646 1374 0 283753 0
Current children cumulated CPU time (s) 402.13
Current children cumulated vsize (KiB) 1140528

[startup+462.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10553
/proc/meminfo: memFree=409284/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1140460 CPUtime=462.12
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 766160 0 0 0 45708 504 0 0 25 0 1 0 3642056 1167831040 259203 1992294400 4194304 9819077 140735084799152 18446744073709551615 7290971 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 285115 259203 646 1374 0 283736 0
Current children cumulated CPU time (s) 462.12
Current children cumulated vsize (KiB) 1140460

[startup+522.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10555
/proc/meminfo: memFree=398372/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1140424 CPUtime=522.09
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 794902 0 0 0 51689 520 0 0 25 0 1 0 3642056 1167794176 261949 1992294400 4194304 9819077 140735084799152 18446744073709551615 7312776 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 285106 261949 646 1374 0 283727 0
Current children cumulated CPU time (s) 522.09
Current children cumulated vsize (KiB) 1140424

[startup+582.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10555
/proc/meminfo: memFree=400356/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1140336 CPUtime=582.07
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 828989 0 0 0 57668 539 0 0 25 0 1 0 3642056 1167704064 261485 1992294400 4194304 9819077 140735084799152 18446744073709551615 6191175 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 285084 261485 646 1374 0 283705 0
Current children cumulated CPU time (s) 582.07
Current children cumulated vsize (KiB) 1140336

[startup+642.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10557
/proc/meminfo: memFree=407672/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1140300 CPUtime=642.05
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 861060 0 0 0 63648 557 0 0 25 0 1 0 3642056 1167667200 259516 1992294400 4194304 9819077 140735084799152 18446744073709551615 7306911 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 285075 259516 646 1374 0 283696 0
Current children cumulated CPU time (s) 642.05
Current children cumulated vsize (KiB) 1140300

[startup+702.3 s]

################
# More data... #
################

/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1108909 0 0 0 111484 701 0 0 25 0 1 0 3642056 1167667200 260235 1992294400 4194304 9819077 140735084799152 18446744073709551615 6198302 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 285075 260235 646 1374 0 283696 0
Current children cumulated CPU time (s) 1121.85
Current children cumulated vsize (KiB) 1140300

[startup+1182.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10571
/proc/meminfo: memFree=387460/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1130724 CPUtime=1181.82
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1149761 0 0 0 117363 819 0 0 25 0 1 0 3642056 1157861376 262594 1992294400 4194304 9819077 140735084799152 18446744073709551615 7233739 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 282681 262604 676 1374 0 281302 0
Current children cumulated CPU time (s) 1181.82
Current children cumulated vsize (KiB) 1130724

[startup+1242.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10573
/proc/meminfo: memFree=378656/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163444 CPUtime=1241.8
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1187066 0 0 0 123341 839 0 0 25 0 1 0 3642056 1191366656 266651 1992294400 4194304 9819077 140735084799152 18446744073709551615 6192272 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290861 266651 676 1374 0 289482 0
Current children cumulated CPU time (s) 1241.8
Current children cumulated vsize (KiB) 1163444

[startup+1302.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10575
/proc/meminfo: memFree=388328/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163508 CPUtime=1301.79
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1227738 0 0 0 129316 863 0 0 25 0 1 0 3642056 1191432192 264190 1992294400 4194304 9819077 140735084799152 18446744073709551615 7290967 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290877 264190 676 1374 0 289498 0
Current children cumulated CPU time (s) 1301.79
Current children cumulated vsize (KiB) 1163508

[startup+1362.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10577
/proc/meminfo: memFree=386840/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163548 CPUtime=1361.76
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1263314 0 0 0 135293 883 0 0 25 0 1 0 3642056 1191473152 264833 1992294400 4194304 9819077 140735084799152 18446744073709551615 6198314 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290887 264833 676 1374 0 289508 0
Current children cumulated CPU time (s) 1361.76
Current children cumulated vsize (KiB) 1163548

[startup+1422.31 s]
/proc/loadavg: 1.03 1.01 1.00 2/107 10588
/proc/meminfo: memFree=385848/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163612 CPUtime=1421.73
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1298470 0 0 0 141268 905 0 0 25 0 1 0 3642056 1191538688 264844 1992294400 4194304 9819077 140735084799152 18446744073709551615 7291987 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290903 264844 676 1374 0 289524 0
Current children cumulated CPU time (s) 1421.73
Current children cumulated vsize (KiB) 1163612

[startup+1482.3 s]
/proc/loadavg: 1.01 1.01 1.00 2/107 10588
/proc/meminfo: memFree=377788/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163640 CPUtime=1481.69
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1327242 0 0 0 147248 921 0 0 25 0 1 0 3642056 1191567360 266889 1992294400 4194304 9819077 140735084799152 18446744073709551615 6674387 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290910 266889 676 1374 0 289531 0
Current children cumulated CPU time (s) 1481.69
Current children cumulated vsize (KiB) 1163640

[startup+1542.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10590
/proc/meminfo: memFree=383988/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163676 CPUtime=1541.67
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1361490 0 0 0 153227 940 0 0 25 0 1 0 3642056 1191604224 265353 1992294400 4194304 9819077 140735084799152 18446744073709551615 7291108 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290919 265353 676 1374 0 289540 0
Current children cumulated CPU time (s) 1541.67
Current children cumulated vsize (KiB) 1163676

[startup+1602.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10592
/proc/meminfo: memFree=378904/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163704 CPUtime=1601.64
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1389815 0 0 0 159209 955 0 0 25 0 1 0 3642056 1191632896 266599 1992294400 4194304 9819077 140735084799152 18446744073709551615 6191145 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290926 266599 676 1374 0 289547 0
Current children cumulated CPU time (s) 1601.64
Current children cumulated vsize (KiB) 1163704

[startup+1662.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10594
/proc/meminfo: memFree=377416/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163736 CPUtime=1661.62
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1417189 0 0 0 165191 971 0 0 25 0 1 0 3642056 1191665664 266923 1992294400 4194304 9819077 140735084799152 18446744073709551615 7480977 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290934 266923 676 1374 0 289555 0
Current children cumulated CPU time (s) 1661.62
Current children cumulated vsize (KiB) 1163736

[startup+1722.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10596
/proc/meminfo: memFree=376052/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163736 CPUtime=1721.6
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1450023 0 0 0 171171 989 0 0 25 0 1 0 3642056 1191665664 263832 1992294400 4194304 9819077 140735084799152 18446744073709551615 6191141 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290934 263832 676 1374 0 289555 0
Current children cumulated CPU time (s) 1721.6
Current children cumulated vsize (KiB) 1163736

[startup+1782.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10596
/proc/meminfo: memFree=389196/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163736 CPUtime=1781.58
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1476880 0 0 0 177152 1006 0 0 25 0 1 0 3642056 1191665664 263929 1992294400 4194304 9819077 140735084799152 18446744073709551615 7292002 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290934 263929 676 1374 0 289555 0
Current children cumulated CPU time (s) 1781.58
Current children cumulated vsize (KiB) 1163736



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1800.8 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10598
/proc/meminfo: memFree=389444/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163736 CPUtime=1800.07
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1485676 0 0 0 178997 1010 0 0 25 0 1 0 3642056 1191665664 263860 1992294400 4194304 9819077 140735084799152 18446744073709551615 6192320 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290934 263860 676 1374 0 289555 0
Current children cumulated CPU time (s) 1800.07
Current children cumulated vsize (KiB) 1163736

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Sending SIGKILL to process tree (bottom up)

Sending SIGKILL to -10540

Solver just ended. Dumping a history of the last processes samples

[startup+1801.4 s]
/proc/loadavg: 1.00 1.00 1.00 2/107 10598
/proc/meminfo: memFree=389444/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163736 CPUtime=1800.66
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1485797 0 0 0 179056 1010 0 0 25 0 1 0 3642056 1191665664 263981 1992294400 4194304 9819077 140735084799152 18446744073709551615 7304771 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290934 263981 676 1374 0 289555 0
Current children cumulated CPU time (s) 1800.66
Current children cumulated vsize (KiB) 1163736

[startup+1802.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 10599
/proc/meminfo: memFree=388568/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163736 CPUtime=1801.46
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1486050 0 0 0 179136 1010 0 0 25 0 1 0 3642056 1191665664 264234 1992294400 4194304 9819077 140735084799152 18446744073709551615 7293542 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290934 264234 676 1374 0 289555 0
Current children cumulated CPU time (s) 1801.46
Current children cumulated vsize (KiB) 1163736

[startup+1802.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 10599
/proc/meminfo: memFree=388568/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163736 CPUtime=1801.86
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1486185 0 0 0 179176 1010 0 0 25 0 1 0 3642056 1191665664 264369 1992294400 4194304 9819077 140735084799152 18446744073709551615 6656816 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290934 264369 676 1374 0 289555 0
Current children cumulated CPU time (s) 1801.86
Current children cumulated vsize (KiB) 1163736

[startup+1802.8 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 10599
/proc/meminfo: memFree=386956/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=1163736 CPUtime=1802.08
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4202496 1486272 0 0 0 179197 1011 0 0 25 0 1 0 3642056 1191665664 264456 1992294400 4194304 9819077 140735084799152 18446744073709551615 6656816 0 0 4096 16384 0 0 0 17 1 0 0 0
/proc/10540/statm: 290934 264456 676 1374 0 289555 0
Current children cumulated CPU time (s) 1802.08
Current children cumulated vsize (KiB) 1163736

[startup+1802.91 s]
/proc/loadavg: 1.00 1.00 1.00 2/108 10599
/proc/meminfo: memFree=386956/2059040 swapFree=4192956/4192956
[pid=10540] ppid=10538 vsize=0 CPUtime=1802.17
/proc/10540/stat : 10540 (pbscip.linux.x8) R 10538 10540 10131 0 -1 4203524 1486272 0 0 0 179197 1020 0 0 25 0 1 0 3642056 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 18446744073709551615 0 0 17 1 0 0 0
/proc/10540/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1802.17
Current children cumulated vsize (KiB) 0

Child ended because it received signal 9 (SIGKILL)
Real time (s): 1802.91
CPU time (s): 1802.18
CPU user time (s): 1791.97
CPU system time (s): 10.2114
CPU usage (%): 99.9597
Max. virtual memory (cumulated for all children) (KiB): 1409064

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1791.97
system time used= 10.2114
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 1486272
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 4
involuntary context switches= 22308

runsolver used 3.01654 second user time and 8.48771 second system time

The end

Launcher Data 

Begin job on node044 at 2010-06-15 19:38:18
IDJOB=2665555
IDBENCH=2956
IDSOLVER=1168
FILE ID=node044/2665555-1276623495
PBS_JOBID= 11172315
Free space on /tmp= 62540 MiB

SOLVER NAME= SCIPclp SCIP 1.2.1.2 with Clp 1.11.1 (Release Version) as LP solver
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.02.opb
COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt.clp -f BENCHNAME -t TIMEOUT -m MEMLIMIT
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-2665555-1276623495/watcher-2665555-1276623495 -o /tmp/evaluation-result-2665555-1276623495/solver-2665555-1276623495 -C 1800 -W 2000 -M 1800  HOME/pbscip.linux.x86_64.gnu.opt.clp -f HOME/instance-2665555-1276623495.opb -t 1800 -m 1800

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= 88c0da0b31a99941a4f2c09165ead688
RANDOM SEED=550380857

node044.alineos.net Linux 2.6.18-164.el5 #1 SMP Thu Sep 3 03:28:30 EDT 2009

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.266
cache size	: 2048 KB
physical id	: 0
siblings	: 1
core id		: 0
cpu cores	: 1
apicid		: 0
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr
bogomips	: 6000.53
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.266
cache size	: 2048 KB
physical id	: 3
siblings	: 1
core id		: 0
cpu cores	: 1
apicid		: 6
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm constant_tsc pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5599.46
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2059040 kB
MemFree:       1443980 kB
Buffers:         83860 kB
Cached:         399280 kB
SwapCached:          0 kB
Active:         247860 kB
Inactive:       294660 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2059040 kB
LowFree:       1443980 kB
SwapTotal:     4192956 kB
SwapFree:      4192956 kB
Dirty:           52776 kB
Writeback:           8 kB
AnonPages:       59332 kB
Mapped:          15464 kB
Slab:            50824 kB
PageTables:       4036 kB
NFS_Unstable:        0 kB
Bounce:              0 kB
CommitLimit:   5222476 kB
Committed_AS:   180460 kB
VmallocTotal: 34359738367 kB
VmallocUsed:    264948 kB
VmallocChunk: 34359471699 kB
HugePages_Total:     0
HugePages_Free:      0
HugePages_Rsvd:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 62536 MiB
End job on node044 at 2010-06-15 20:08:21