Trace number 1869603

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjCPU timeWall clock time
SCIPclp SCIP 1.1.0.7 with CLP 1.8.2? (TO) 1802.28 1802.41

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-nonunif-100_100.02.opb
MD5SUM88c0da0b31a99941a4f2c09165ead688
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkOPT
Best value of the objective obtained on this benchmark44
Best CPU time to get the best result obtained on this benchmark48.5226
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 44
Optimality of the best value was proved YES
Number of variables21566
Total number of constraints1314050
Number of constraints which are clauses1310032
Number of constraints which are cardinality constraints (but not clauses)4018
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint164
Number of terms in the objective function 164
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 164
Number of bits of the sum of numbers in the objective function 8
Biggest number in a constraint 162
Number of bits of the biggest number in a constraint 8
Biggest sum of numbers in a constraint 326
Number of bits of the biggest sum of numbers9
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data 

18.68/18.72	c SCIP version 1.1.0.7
18.68/18.72	c LP-Solver Clp 1.8.2
18.68/18.72	c user parameter file <scip.set> not found - using default parameters
18.68/18.72	c read problem <HOME/instance-1869603-1245180864.opb>
18.68/18.72	c original problem has 21566 variables (21566 bin, 0 int, 0 impl, 0 cont) and 1314050 constraints
22.19/22.20	c start presolving problem
22.19/22.20	c presolving:
32.27/32.33	c (round 1) 10314 del vars, 1190426 del conss, 9898 chg bounds, 160 chg sides, 320 chg coeffs, 0 upgd conss, 3078960 impls, 0 clqs
32.38/32.49	c (round 2) 10324 del vars, 1197874 del conss, 9898 chg bounds, 160 chg sides, 320 chg coeffs, 0 upgd conss, 3078960 impls, 0 clqs
32.57/32.60	c (round 3) 10326 del vars, 1197876 del conss, 9898 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 3079076 impls, 0 clqs
33.78/33.88	c (round 4) 10326 del vars, 1197876 del conss, 9898 chg bounds, 162 chg sides, 324 chg coeffs, 116174 upgd conss, 3079076 impls, 0 clqs
43.08/43.16	c    (22.4s) probing: 1000/11240 (8.9%) - 0 fixings, 0 aggregations, 3348 implications, 0 bound changes
53.88/53.91	c    (33.1s) probing: 2000/11240 (17.8%) - 0 fixings, 0 aggregations, 13007 implications, 0 bound changes
53.88/53.92	c    (33.1s) probing: 2001/11240 (17.8%) - 0 fixings, 0 aggregations, 13012 implications, 0 bound changes
53.88/53.92	c    (33.1s) probing aborted: 2000/2000 successive useless probings
53.88/53.92	c presolving (5 rounds):
53.88/53.92	c  10326 deleted vars, 1197876 deleted constraints, 9898 tightened bounds, 0 added holes, 162 changed sides, 324 changed coefficients
53.88/53.92	c  3107842 implications, 0 cliques
53.88/53.92	c presolved problem has 11240 variables (11240 bin, 0 int, 0 impl, 0 cont) and 116174 constraints
53.88/53.92	c  116174 constraints of type <logicor>
53.88/53.92	c transformed objective value is always integral (scale: 1)
53.88/53.92	c Presolving Time: 30.39
53.88/53.93	c strange?!, PURESAT with obj
53.88/53.93	c -----------------------------------------------------------------------------------------------
53.88/53.93	c # maximal memory usage in MB; reported memory usage is lower than real memory usage!
53.88/53.93	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
53.88/53.93	c limits/memory = c 1620
53.88/53.93	c # maximal time in seconds to run
53.88/53.93	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
53.88/53.93	c limits/time = c 1791
53.88/53.93	c # frequency for displaying node information lines
53.88/53.93	c # [type: int, range: [-1,2147483647], default: 100]
53.88/53.93	c display/freq = c 10000
53.88/53.93	c -----------------------------------------------------------------------------------------------
53.88/53.93	c start solving problem
53.88/53.93	c 
143.68/143.70	c  time | node  | left  |LP iter| mem |mdpt |frac |vars |cons |ccons|cols |rows |cuts |confs|strbr|  dualbound   | primalbound  |  gap   
143.68/143.70	c   123s|     1 |     0 | 19713 | 763M|   0 |  10k|  11k| 116k| 116k|  11k| 116k|   0 |   0 |   0 | 7.000000e+00 |      --      |    Inf

Verifier Data 

ERROR: no interpretation found !

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-1869603-1245180864/watcher-1869603-1245180864 -o /tmp/evaluation-result-1869603-1245180864/solver-1869603-1245180864 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt-gcc42.clp -t 1800 -m 1800 -f HOME/instance-1869603-1245180864.opb 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 1.00 1.00 1.00 3/64 31111
/proc/meminfo: memFree=1792520/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=7616 CPUtime=0
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 634 0 0 0 0 0 0 0 18 0 1 0 185687092 7798784 619 1992294400 4194304 9342243 548682068736 18446744073709551615 4402248 0 0 4096 0 0 0 0 17 0 0 0
/proc/31111/statm: 1904 630 353 1256 0 643 0

[startup+0.067536 s]
/proc/loadavg: 1.00 1.00 1.00 3/64 31111
/proc/meminfo: memFree=1792520/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=18496 CPUtime=0.06
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 3537 0 0 0 5 1 0 0 18 0 1 0 185687092 18939904 3521 1992294400 4194304 9342243 548682068736 18446744073709551615 5858006 0 0 4096 0 0 0 0 17 0 0 0
/proc/31111/statm: 4624 3529 378 1256 0 3363 0
Current children cumulated CPU time (s) 0.06
Current children cumulated vsize (KiB) 18496

[startup+0.102525 s]
/proc/loadavg: 1.00 1.00 1.00 3/64 31111
/proc/meminfo: memFree=1792520/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=20124 CPUtime=0.09
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 3994 0 0 0 8 1 0 0 18 0 1 0 185687092 20606976 3978 1992294400 4194304 9342243 548682068736 18446744073709551615 8247768 0 0 4096 0 0 0 0 17 0 0 0
/proc/31111/statm: 5031 3978 378 1256 0 3770 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 20124

[startup+0.302469 s]
/proc/loadavg: 1.00 1.00 1.00 3/64 31111
/proc/meminfo: memFree=1792520/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=25060 CPUtime=0.29
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 5254 0 0 0 28 1 0 0 19 0 1 0 185687092 25661440 5238 1992294400 4194304 9342243 548682068736 18446744073709551615 8247739 0 0 4096 0 0 0 0 17 0 0 0
/proc/31111/statm: 6265 5238 378 1256 0 5004 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 25060

[startup+0.701353 s]
/proc/loadavg: 1.00 1.00 1.00 3/64 31111
/proc/meminfo: memFree=1792520/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=34528 CPUtime=0.69
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 7583 0 0 0 66 3 0 0 23 0 1 0 185687092 35356672 7567 1992294400 4194304 9342243 548682068736 18446744073709551615 8247768 0 0 4096 0 0 0 0 17 0 0 0
/proc/31111/statm: 8632 7567 378 1256 0 7371 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 34528

[startup+1.50112 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=1755712/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=55224 CPUtime=1.49
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 12785 0 0 0 144 5 0 0 25 0 1 0 185687092 56549376 12769 1992294400 4194304 9342243 548682068736 18446744073709551615 4212850 0 0 4096 0 0 0 0 17 0 0 0
/proc/31111/statm: 13806 12769 378 1256 0 12545 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 55224

[startup+3.10168 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=1726464/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=93652 CPUtime=3.09
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 22349 0 0 0 299 10 0 0 25 0 1 0 185687092 95899648 22333 1992294400 4194304 9342243 548682068736 18446744073709551615 8235723 0 0 4096 0 0 0 0 17 1 0 0
/proc/31111/statm: 23413 22333 378 1256 0 22152 0
Current children cumulated CPU time (s) 3.09
Current children cumulated vsize (KiB) 93652

[startup+6.30175 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=1646272/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=174668 CPUtime=6.28
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 42568 0 0 0 610 18 0 0 25 0 1 0 185687092 178860032 42552 1992294400 4194304 9342243 548682068736 18446744073709551615 8247778 0 0 4096 0 0 0 0 17 0 0 0
/proc/31111/statm: 43667 42552 378 1256 0 42406 0
Current children cumulated CPU time (s) 6.28
Current children cumulated vsize (KiB) 174668

[startup+12.7019 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=1478016/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=338520 CPUtime=12.69
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 83397 0 0 0 1233 36 0 0 25 0 1 0 185687092 346644480 83381 1992294400 4194304 9342243 548682068736 18446744073709551615 8247753 0 0 4096 0 0 0 0 17 0 0 0
/proc/31111/statm: 84630 83381 378 1256 0 83369 0
Current children cumulated CPU time (s) 12.69
Current children cumulated vsize (KiB) 338520

[startup+25.5012 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=482688/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1328292 CPUtime=25.48
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 329071 0 0 0 2387 161 0 0 25 0 1 0 185687092 1360171008 328701 1992294400 4194304 9342243 548682068736 18446744073709551615 8300202 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 332073 328701 473 1256 0 330812 0
Current children cumulated CPU time (s) 25.48
Current children cumulated vsize (KiB) 1328292

[startup+51.1019 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=405056/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1399900 CPUtime=51.08
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 350633 0 0 0 4848 260 0 0 25 0 1 0 185687092 1433497600 346747 1992294400 4194304 9342243 548682068736 18446744073709551615 8300202 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 349975 346747 495 1256 0 348714 0
Current children cumulated CPU time (s) 51.08
Current children cumulated vsize (KiB) 1399900

[startup+102.306 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=415232/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1388604 CPUtime=102.28
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 350765 0 0 0 9963 265 0 0 25 0 1 0 185687092 1421930496 344312 1992294400 4194304 9342243 548682068736 18446744073709551615 6959585 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 347151 344312 616 1256 0 345890 0
Current children cumulated CPU time (s) 102.28
Current children cumulated vsize (KiB) 1388604

[startup+162.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=415168/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1388604 CPUtime=162.27
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 350792 0 0 0 15960 267 0 0 25 0 1 0 185687092 1421930496 344339 1992294400 4194304 9342243 548682068736 18446744073709551615 6959589 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 347151 344339 643 1256 0 345890 0
Current children cumulated CPU time (s) 162.27
Current children cumulated vsize (KiB) 1388604

[startup+222.303 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=411712/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=222.28
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 21959 269 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6964580 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 222.28
Current children cumulated vsize (KiB) 1412380

[startup+282.303 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=411712/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=282.28
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 27959 269 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6959585 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 282.28
Current children cumulated vsize (KiB) 1412380

[startup+342.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=411712/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=342.26
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 33956 270 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6962202 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 342.26
Current children cumulated vsize (KiB) 1412380

[startup+402.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=411648/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=402.27
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 39956 271 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6964331 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 402.27
Current children cumulated vsize (KiB) 1412380

[startup+462.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=411648/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=462.25
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 45954 271 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952948 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 462.25
Current children cumulated vsize (KiB) 1412380

[startup+522.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=411648/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=522.26
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 51952 274 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952956 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 522.26
Current children cumulated vsize (KiB) 1412380

[startup+582.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=411648/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=582.25
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 57950 275 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952391 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 582.25
Current children cumulated vsize (KiB) 1412380

[startup+642.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31112
/proc/meminfo: memFree=411648/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=642.26
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 63950 276 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6962268 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 642.26
Current children cumulated vsize (KiB) 1412380

[startup+702.301 s]

################
# More data... #
################

/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 99942 281 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952126 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1002.23
Current children cumulated vsize (KiB) 1412380

[startup+1062.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31114
/proc/meminfo: memFree=411328/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1062.22
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 105940 282 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952948 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1062.22
Current children cumulated vsize (KiB) 1412380

[startup+1122.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31114
/proc/meminfo: memFree=411328/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1122.23
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 111940 283 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952948 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1122.23
Current children cumulated vsize (KiB) 1412380

[startup+1182.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31114
/proc/meminfo: memFree=411328/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1182.23
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 117939 284 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6504501 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1182.23
Current children cumulated vsize (KiB) 1412380

[startup+1242.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31114
/proc/meminfo: memFree=411200/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1242.23
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 123938 285 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952853 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1242.23
Current children cumulated vsize (KiB) 1412380

[startup+1302.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31114
/proc/meminfo: memFree=411200/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1302.23
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 129938 285 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6938543 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1302.23
Current children cumulated vsize (KiB) 1412380

[startup+1362.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31114
/proc/meminfo: memFree=411136/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1362.22
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 135936 286 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6504868 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1362.22
Current children cumulated vsize (KiB) 1412380

[startup+1422.31 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31114
/proc/meminfo: memFree=411136/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1422.23
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 141936 287 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6504812 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1422.23
Current children cumulated vsize (KiB) 1412380

[startup+1482.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31114
/proc/meminfo: memFree=411136/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1482.22
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 147934 288 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6147970 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1482.22
Current children cumulated vsize (KiB) 1412380

[startup+1542.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31114
/proc/meminfo: memFree=411136/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1542.23
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 153933 290 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6504501 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1542.23
Current children cumulated vsize (KiB) 1412380

[startup+1602.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31120
/proc/meminfo: memFree=411008/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1602.18
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 159928 290 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952863 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1602.18
Current children cumulated vsize (KiB) 1412380

[startup+1662.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31120
/proc/meminfo: memFree=411008/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1662.18
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 165928 290 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6951671 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1662.18
Current children cumulated vsize (KiB) 1412380

[startup+1722.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31120
/proc/meminfo: memFree=411008/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1722.17
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 171925 292 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6504556 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1722.17
Current children cumulated vsize (KiB) 1412380

[startup+1782.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31120
/proc/meminfo: memFree=411008/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1782.16
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 177924 292 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952385 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1782.16
Current children cumulated vsize (KiB) 1412380



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1800.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 31120
/proc/meminfo: memFree=411008/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1800.07
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 179714 293 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952952 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1800.07
Current children cumulated vsize (KiB) 1412380

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Sending SIGKILL to process tree (bottom up)

Sending SIGKILL to -31111

Solver just ended. Dumping a history of the last processes samples

[startup+1801.4 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 31121
/proc/meminfo: memFree=410936/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1801.27
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 179834 293 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6952948 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1801.27
Current children cumulated vsize (KiB) 1412380

[startup+1802.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 31121
/proc/meminfo: memFree=410936/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=1412380 CPUtime=1802.07
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4194304 352596 0 0 0 179914 293 0 0 25 0 1 0 185687092 1446277120 345244 1992294400 4194304 9342243 548682068736 18446744073709551615 6498487 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 353095 345244 643 1256 0 351834 0
Current children cumulated CPU time (s) 1802.07
Current children cumulated vsize (KiB) 1412380

[startup+1802.4 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 31121
/proc/meminfo: memFree=410936/2055920 swapFree=4191900/4192956
[pid=31111] ppid=31109 vsize=0 CPUtime=1802.26
/proc/31111/stat : 31111 (pbscip.linux.x8) R 31109 31111 30067 0 -1 4195332 352596 0 0 0 179914 312 0 0 25 0 1 0 185687092 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 0 0 0 17 0 0 0
/proc/31111/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1802.26
Current children cumulated vsize (KiB) 0

Child ended because it received signal 9 (SIGKILL)
Real time (s): 1802.41
CPU time (s): 1802.28
CPU user time (s): 1799.15
CPU system time (s): 3.13352
CPU usage (%): 99.993
Max. virtual memory (cumulated for all children) (KiB): 1412380

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1799.15
system time used= 3.13352
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 352596
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2
involuntary context switches= 7024

runsolver used 1.68874 second user time and 4.87726 second system time

The end

Launcher Data 

Begin job on node16 at 2009-06-16 21:34:26
IDJOB=1869603
IDBENCH=2956
IDSOLVER=684
FILE ID=node16/1869603-1245180864
PBS_JOBID= 9363891
Free space on /tmp= 66236 MiB

SOLVER NAME= SCIPclp SCIP 1.1.0.7 with CLP 1.8.2
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.02.opb
COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt-gcc42.clp -t TIMEOUT -m MEMLIMIT -f BENCHNAME
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-1869603-1245180864/watcher-1869603-1245180864 -o /tmp/evaluation-result-1869603-1245180864/solver-1869603-1245180864 -C 1800 -W 2000 -M 1800  HOME/pbscip.linux.x86_64.gnu.opt-gcc42.clp -t 1800 -m 1800 -f HOME/instance-1869603-1245180864.opb

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= 88c0da0b31a99941a4f2c09165ead688
RANDOM SEED=2019287141

node16.alineos.net Linux 2.6.9-22.EL.rootsmp #1 SMP Mon Oct 3 08:59:52 CEST 2005

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.214
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5914.62
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.214
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5586.94
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2055920 kB
MemFree:       1792936 kB
Buffers:         36448 kB
Cached:         149068 kB
SwapCached:        260 kB
Active:          97808 kB
Inactive:       100516 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2055920 kB
LowFree:       1792936 kB
SwapTotal:     4192956 kB
SwapFree:      4191900 kB
Dirty:           58224 kB
Writeback:           0 kB
Mapped:          21276 kB
Slab:            50660 kB
Committed_AS:   158612 kB
PageTables:       1440 kB
VmallocTotal: 536870911 kB
VmallocUsed:    264952 kB
VmallocChunk: 536605679 kB
HugePages_Total:     0
HugePages_Free:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 66224 MiB
End job on node16 at 2009-06-16 22:04:29