Trace number 1869596

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjCPU timeWall clock time
SCIPspx SCIP 1.1.0.7 with SoPLEX 1.4.1(24.4.2009)? (TO) 1802.25 1803.2

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-nonunif-100_100.07.opb
MD5SUM7a51facc2b0ceeb02915874508a30079
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkOPT
Best value of the objective obtained on this benchmark37
Best CPU time to get the best result obtained on this benchmark41.2657
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 37
Optimality of the best value was proved YES
Number of variables21756
Total number of constraints1266468
Number of constraints which are clauses1262688
Number of constraints which are cardinality constraints (but not clauses)3780
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint168
Number of terms in the objective function 168
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 168
Number of bits of the sum of numbers in the objective function 8
Biggest number in a constraint 166
Number of bits of the biggest number in a constraint 8
Biggest sum of numbers in a constraint 334
Number of bits of the biggest sum of numbers9
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data 

17.89/17.91	c SCIP version 1.1.0.7
17.89/17.91	c LP-Solver SoPlex 1.4.1
17.89/17.91	c user parameter file <scip.set> not found - using default parameters
17.89/17.91	c read problem <HOME/instance-1869596-1245180310.opb>
17.89/17.91	c original problem has 21756 variables (21756 bin, 0 int, 0 impl, 0 cont) and 1266468 constraints
21.19/21.29	c start presolving problem
21.19/21.29	c presolving:
30.68/30.78	c (round 1) 9584 del vars, 1131751 del conss, 9140 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2936383 impls, 0 clqs
30.88/30.93	c (round 2) 9587 del vars, 1136608 del conss, 9140 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2936383 impls, 0 clqs
32.27/32.39	c (round 3) 9587 del vars, 1136608 del conss, 9140 chg bounds, 162 chg sides, 324 chg coeffs, 129860 upgd conss, 2936383 impls, 0 clqs
41.77/41.84	c    (21.9s) probing: 1000/12169 (8.2%) - 0 fixings, 0 aggregations, 8630 implications, 0 bound changes
52.95/53.00	c    (33.0s) probing: 2000/12169 (16.4%) - 0 fixings, 0 aggregations, 30913 implications, 0 bound changes
52.95/53.01	c    (33.0s) probing: 2001/12169 (16.4%) - 0 fixings, 0 aggregations, 30943 implications, 0 bound changes
52.95/53.01	c    (33.0s) probing aborted: 2000/2000 successive useless probings
52.95/53.01	c presolving (4 rounds):
52.95/53.01	c  9587 deleted vars, 1136608 deleted constraints, 9140 tightened bounds, 0 added holes, 162 changed sides, 324 changed coefficients
52.95/53.01	c  3001011 implications, 0 cliques
52.95/53.01	c presolved problem has 12169 variables (12169 bin, 0 int, 0 impl, 0 cont) and 129860 constraints
52.95/53.01	c  129860 constraints of type <logicor>
52.95/53.01	c transformed objective value is always integral (scale: 1)
52.95/53.01	c Presolving Time: 30.42
52.95/53.02	c strange?!, PURESAT with obj
52.95/53.02	c -----------------------------------------------------------------------------------------------
52.95/53.02	c # maximal memory usage in MB; reported memory usage is lower than real memory usage!
52.95/53.02	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
52.95/53.02	c limits/memory = c 1620
52.95/53.02	c # maximal time in seconds to run
52.95/53.02	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
52.95/53.02	c limits/time = c 1791
52.95/53.02	c # frequency for displaying node information lines
52.95/53.02	c # [type: int, range: [-1,2147483647], default: 100]
52.95/53.02	c display/freq = c 10000
52.95/53.02	c -----------------------------------------------------------------------------------------------
52.95/53.02	c start solving problem
52.95/53.02	c 
348.17/348.47	c  time | node  | left  |LP iter| mem |mdpt |frac |vars |cons |ccons|cols |rows |cuts |confs|strbr|  dualbound   | primalbound  |  gap   
348.17/348.47	c   328s|     1 |     0 | 26499 | 747M|   0 |9653 |  12k| 129k| 129k|  12k| 129k|   0 |   0 |   0 | 5.000000e+00 |      --      |    Inf

Verifier Data 

ERROR: no interpretation found !

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-1869596-1245180310/watcher-1869596-1245180310 -o /tmp/evaluation-result-1869596-1245180310/solver-1869596-1245180310 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt-gcc42.spx -t 1800 -m 1800 -f HOME/instance-1869596-1245180310.opb 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 1.00 1.00 1.00 3/64 722
/proc/meminfo: memFree=1795508/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=6100 CPUtime=0
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 604 0 0 0 0 0 0 0 18 0 1 0 185628471 6246400 586 1992294400 4194304 7823515 548682068736 18446744073709551615 4402248 0 0 4096 0 0 0 0 17 0 0 0
/proc/722/statm: 1525 596 325 886 0 635 0

[startup+0.0173001 s]
/proc/loadavg: 1.00 1.00 1.00 3/64 722
/proc/meminfo: memFree=1795508/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=9960 CPUtime=0.01
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 1802 0 0 0 1 0 0 0 18 0 1 0 185628471 10199040 1784 1992294400 4194304 7823515 548682068736 18446744073709551615 6908036 0 0 4096 0 0 0 0 17 0 0 0
/proc/722/statm: 2490 1784 354 886 0 1600 0
Current children cumulated CPU time (s) 0.01
Current children cumulated vsize (KiB) 9960

[startup+0.101315 s]
/proc/loadavg: 1.00 1.00 1.00 3/64 722
/proc/meminfo: memFree=1795508/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=18504 CPUtime=0.09
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 3954 0 0 0 9 0 0 0 18 0 1 0 185628471 18948096 3936 1992294400 4194304 7823515 548682068736 18446744073709551615 6854691 0 0 4096 0 0 0 0 17 0 0 0
/proc/722/statm: 4626 3936 354 886 0 3736 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 18504

[startup+0.30135 s]
/proc/loadavg: 1.00 1.00 1.00 3/64 722
/proc/meminfo: memFree=1795508/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=23292 CPUtime=0.29
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 5152 0 0 0 28 1 0 0 19 0 1 0 185628471 23851008 5134 1992294400 4194304 7823515 548682068736 18446744073709551615 6908043 0 0 4096 0 0 0 0 17 0 0 0
/proc/722/statm: 5823 5134 354 886 0 4933 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 23292

[startup+0.701417 s]
/proc/loadavg: 1.00 1.00 1.00 3/64 722
/proc/meminfo: memFree=1795508/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=33760 CPUtime=0.69
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 7766 0 0 0 67 2 0 0 23 0 1 0 185628471 34570240 7748 1992294400 4194304 7823515 548682068736 18446744073709551615 5878822 0 0 4096 0 0 0 0 17 0 0 0
/proc/722/statm: 8440 7752 354 886 0 7550 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 33760

[startup+1.50171 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=1757484/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=53684 CPUtime=1.49
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 12746 0 0 0 145 4 0 0 25 0 1 0 185628471 54972416 12728 1992294400 4194304 7823515 548682068736 18446744073709551615 5875880 0 0 4096 0 0 0 0 17 0 0 0
/proc/722/statm: 13421 12728 354 886 0 12531 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 53684

[startup+3.10182 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=1731372/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=95200 CPUtime=3.09
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 23095 0 0 0 300 9 0 0 25 0 1 0 185628471 97484800 23077 1992294400 4194304 7823515 548682068736 18446744073709551615 5538397 0 0 4096 0 0 0 0 17 0 0 0
/proc/722/statm: 23800 23077 354 886 0 22910 0
Current children cumulated CPU time (s) 3.09
Current children cumulated vsize (KiB) 95200

[startup+6.30237 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=1646892/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=176604 CPUtime=6.29
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 43411 0 0 0 610 19 0 0 25 0 1 0 185628471 180842496 43393 1992294400 4194304 7823515 548682068736 18446744073709551615 6290248 0 0 4096 0 0 0 0 17 0 0 0
/proc/722/statm: 44151 43393 354 886 0 43261 0
Current children cumulated CPU time (s) 6.29
Current children cumulated vsize (KiB) 176604

[startup+12.7015 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=1477484/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=340520 CPUtime=12.69
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 84267 0 0 0 1234 35 0 0 25 0 1 0 185628471 348692480 84249 1992294400 4194304 7823515 548682068736 18446744073709551615 6882144 0 0 4096 0 0 0 0 17 0 0 0
/proc/722/statm: 85130 84249 354 886 0 84240 0
Current children cumulated CPU time (s) 12.69
Current children cumulated vsize (KiB) 340520

[startup+25.5016 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=511084/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1303500 CPUtime=25.49
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 322384 0 0 0 2380 169 0 0 25 0 1 0 185628471 1334784000 322012 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 325875 322012 431 886 0 324985 0
Current children cumulated CPU time (s) 25.49
Current children cumulated vsize (KiB) 1303500

[startup+51.102 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=430252/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1380264 CPUtime=51.05
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345037 0 0 0 4850 255 0 0 25 0 1 0 185628471 1413390336 341148 1992294400 4194304 7823515 548682068736 18446744073709551615 4208150 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 345066 341148 453 886 0 344176 0
Current children cumulated CPU time (s) 51.05
Current children cumulated vsize (KiB) 1380264

[startup+102.307 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439980/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=102.22
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345104 0 0 0 9961 261 0 0 25 0 1 0 185628471 1401823232 338741 1992294400 4194304 7823515 548682068736 18446744073709551615 6908067 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338741 520 886 0 341352 0
Current children cumulated CPU time (s) 102.22
Current children cumulated vsize (KiB) 1368968

[startup+162.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439980/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=162.19
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345104 0 0 0 15954 265 0 0 25 0 1 0 185628471 1401823232 338741 1992294400 4194304 7823515 548682068736 18446744073709551615 6212418 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338741 520 886 0 341352 0
Current children cumulated CPU time (s) 162.19
Current children cumulated vsize (KiB) 1368968

[startup+222.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439980/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=222.15
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345104 0 0 0 21948 267 0 0 25 0 1 0 185628471 1401823232 338741 1992294400 4194304 7823515 548682068736 18446744073709551615 6212302 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338741 520 886 0 341352 0
Current children cumulated CPU time (s) 222.15
Current children cumulated vsize (KiB) 1368968

[startup+282.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439980/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=282.11
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345104 0 0 0 27941 270 0 0 25 0 1 0 185628471 1401823232 338741 1992294400 4194304 7823515 548682068736 18446744073709551615 6151351 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338741 520 886 0 341352 0
Current children cumulated CPU time (s) 282.11
Current children cumulated vsize (KiB) 1368968

[startup+342.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439980/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=342.07
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345104 0 0 0 33935 272 0 0 25 0 1 0 185628471 1401823232 338741 1992294400 4194304 7823515 548682068736 18446744073709551615 6212422 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338741 520 886 0 341352 0
Current children cumulated CPU time (s) 342.07
Current children cumulated vsize (KiB) 1368968

[startup+402.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439980/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=402.05
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 39932 273 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6179847 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 402.05
Current children cumulated vsize (KiB) 1368968

[startup+462.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439980/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=462.01
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 45928 273 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6211594 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 462.01
Current children cumulated vsize (KiB) 1368968

[startup+522.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439980/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=521.99
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 51924 275 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6208508 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 521.99
Current children cumulated vsize (KiB) 1368968

[startup+582.301 s]
/proc/loadavg: 1.06 1.01 1.00 2/65 723
/proc/meminfo: memFree=439980/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=581.95
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 57919 276 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6211732 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 581.95
Current children cumulated vsize (KiB) 1368968

[startup+642.301 s]
/proc/loadavg: 1.07 1.03 1.00 2/65 723
/proc/meminfo: memFree=439980/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=641.93
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 63916 277 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6208777 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 641.93
Current children cumulated vsize (KiB) 1368968

[startup+702.303 s]

################
# More data... #
################

/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 105883 288 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6208911 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1061.71
Current children cumulated vsize (KiB) 1368968

[startup+1122.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439852/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1121.67
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 111874 293 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6019554 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1121.67
Current children cumulated vsize (KiB) 1368968

[startup+1182.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439852/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1181.64
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 117870 294 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6217353 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1181.64
Current children cumulated vsize (KiB) 1368968

[startup+1242.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439788/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1241.62
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 123866 296 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6208516 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1241.62
Current children cumulated vsize (KiB) 1368968

[startup+1302.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439788/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1301.59
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 129862 297 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6217349 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1301.59
Current children cumulated vsize (KiB) 1368968

[startup+1362.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439788/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1361.55
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 135858 297 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6211711 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1361.55
Current children cumulated vsize (KiB) 1368968

[startup+1422.31 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439724/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1421.53
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 141855 298 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1421.53
Current children cumulated vsize (KiB) 1368968

[startup+1482.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439724/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1481.49
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 147849 300 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6177702 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1481.49
Current children cumulated vsize (KiB) 1368968

[startup+1542.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439724/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1541.46
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 153846 300 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6211327 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1541.46
Current children cumulated vsize (KiB) 1368968

[startup+1602.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 723
/proc/meminfo: memFree=439660/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1601.44
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 159842 302 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6211590 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1601.44
Current children cumulated vsize (KiB) 1368968

[startup+1662.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 725
/proc/meminfo: memFree=439468/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1661.4
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 165838 302 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6208315 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1661.4
Current children cumulated vsize (KiB) 1368968

[startup+1722.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 725
/proc/meminfo: memFree=439532/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1721.38
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 171835 303 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6217443 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1721.38
Current children cumulated vsize (KiB) 1368968

[startup+1782.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 725
/proc/meminfo: memFree=439532/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1781.35
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 177830 305 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6208504 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1781.35
Current children cumulated vsize (KiB) 1368968



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1801 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 725
/proc/meminfo: memFree=439532/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1800.05
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 179699 306 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6208777 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1800.05
Current children cumulated vsize (KiB) 1368968

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Sending SIGKILL to process tree (bottom up)

Sending SIGKILL to -722

Solver just ended. Dumping a history of the last processes samples

[startup+1801.4 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 725
/proc/meminfo: memFree=439532/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1800.45
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 179739 306 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6177714 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1800.45
Current children cumulated vsize (KiB) 1368968

[startup+1802.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 726
/proc/meminfo: memFree=439524/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1801.25
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 179819 306 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6019508 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1801.25
Current children cumulated vsize (KiB) 1368968

[startup+1803 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 726
/proc/meminfo: memFree=439524/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=1368968 CPUtime=1802.05
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4194304 345115 0 0 0 179899 306 0 0 25 0 1 0 185628471 1401823232 338752 1992294400 4194304 7823515 548682068736 18446744073709551615 6208622 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 342242 338752 531 886 0 341352 0
Current children cumulated CPU time (s) 1802.05
Current children cumulated vsize (KiB) 1368968

[startup+1803.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 726
/proc/meminfo: memFree=439524/2055920 swapFree=4181368/4192956
[pid=722] ppid=720 vsize=0 CPUtime=1802.24
/proc/722/stat : 722 (pbscip.linux.x8) R 720 722 585 0 -1 4195332 345115 0 0 0 179899 325 0 0 25 0 1 0 185628471 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 0 0 0 17 0 0 0
/proc/722/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1802.24
Current children cumulated vsize (KiB) 0

Child ended because it received signal 9 (SIGKILL)
Real time (s): 1803.2
CPU time (s): 1802.25
CPU user time (s): 1799
CPU system time (s): 3.2555
CPU usage (%): 99.9473
Max. virtual memory (cumulated for all children) (KiB): 1380264

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1799
system time used= 3.2555
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 345115
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 3
involuntary context switches= 6943

runsolver used 1.60675 second user time and 4.96024 second system time

The end

Launcher Data 

Begin job on node43 at 2009-06-16 21:25:13
IDJOB=1869596
IDBENCH=2953
IDSOLVER=683
FILE ID=node43/1869596-1245180310
PBS_JOBID= 9363947
Free space on /tmp= 66148 MiB

SOLVER NAME= SCIPspx SCIP 1.1.0.7 with SoPLEX 1.4.1(24.4.2009)
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.07.opb
COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt-gcc42.spx -t TIMEOUT -m MEMLIMIT -f BENCHNAME
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-1869596-1245180310/watcher-1869596-1245180310 -o /tmp/evaluation-result-1869596-1245180310/solver-1869596-1245180310 -C 1800 -W 2000 -M 1800  HOME/pbscip.linux.x86_64.gnu.opt-gcc42.spx -t 1800 -m 1800 -f HOME/instance-1869596-1245180310.opb

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= 7a51facc2b0ceeb02915874508a30079
RANDOM SEED=998016833

node43.alineos.net Linux 2.6.9-22.EL.rootsmp #1 SMP Mon Oct 3 08:59:52 CEST 2005

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.281
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5914.62
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.281
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5586.94
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2055920 kB
MemFree:       1795924 kB
Buffers:         48568 kB
Cached:         148720 kB
SwapCached:       5352 kB
Active:          93204 kB
Inactive:       111960 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2055920 kB
LowFree:       1795924 kB
SwapTotal:     4192956 kB
SwapFree:      4181368 kB
Dirty:           54704 kB
Writeback:           0 kB
Mapped:          13588 kB
Slab:            40756 kB
Committed_AS:   175740 kB
PageTables:       1448 kB
VmallocTotal: 536870911 kB
VmallocUsed:    264952 kB
VmallocChunk: 536605679 kB
HugePages_Total:     0
HugePages_Free:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 66140 MiB
End job on node43 at 2009-06-16 21:55:16