Trace number 1869595

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjCPU timeWall clock time
SCIPclp SCIP 1.1.0.7 with CLP 1.8.2? (TO) 1802.29 1802.81

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-nonunif-100_100.11.opb
MD5SUM5f844d3fbd9d157e56bab6c09ee5f179
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkOPT
Best value of the objective obtained on this benchmark38
Best CPU time to get the best result obtained on this benchmark255.704
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 38
Optimality of the best value was proved YES
Number of variables21675
Total number of constraints1210400
Number of constraints which are clauses1206830
Number of constraints which are cardinality constraints (but not clauses)3570
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint170
Number of terms in the objective function 170
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 170
Number of bits of the sum of numbers in the objective function 8
Biggest number in a constraint 168
Number of bits of the biggest number in a constraint 8
Biggest sum of numbers in a constraint 338
Number of bits of the biggest sum of numbers9
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data 

18.39/18.42	c SCIP version 1.1.0.7
18.39/18.42	c LP-Solver Clp 1.8.2
18.39/18.42	c user parameter file <scip.set> not found - using default parameters
18.39/18.42	c read problem <HOME/instance-1869595-1245180249.opb>
18.39/18.42	c original problem has 21675 variables (21675 bin, 0 int, 0 impl, 0 cont) and 1210400 constraints
21.69/21.74	c start presolving problem
21.69/21.74	c presolving:
31.38/31.42	c (round 1) 10229 del vars, 1090739 del conss, 9827 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2971827 impls, 0 clqs
31.49/31.58	c (round 2) 10233 del vars, 1099536 del conss, 9827 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2971827 impls, 0 clqs
32.78/32.86	c (round 3) 10233 del vars, 1099536 del conss, 9827 chg bounds, 162 chg sides, 324 chg coeffs, 110864 upgd conss, 2971827 impls, 0 clqs
33.98/34.10	c    (13.7s) probing: 161/11442 (1.4%) - 0 fixings, 0 aggregations, 6 implications, 0 bound changes
33.98/34.10	c    (13.7s) probing aborted: 100/100 successive totally useless probings
33.98/34.10	c presolving (4 rounds):
33.98/34.10	c  10233 deleted vars, 1099536 deleted constraints, 9827 tightened bounds, 0 added holes, 162 changed sides, 324 changed coefficients
33.98/34.10	c  2971839 implications, 0 cliques
33.98/34.10	c presolved problem has 11442 variables (11442 bin, 0 int, 0 impl, 0 cont) and 110864 constraints
33.98/34.10	c  110864 constraints of type <logicor>
33.98/34.10	c transformed objective value is always integral (scale: 1)
33.98/34.10	c Presolving Time: 11.12
34.08/34.11	c strange?!, PURESAT with obj
34.08/34.11	c -----------------------------------------------------------------------------------------------
34.08/34.11	c # maximal memory usage in MB; reported memory usage is lower than real memory usage!
34.08/34.11	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
34.08/34.11	c limits/memory = c 1620
34.08/34.11	c # maximal time in seconds to run
34.08/34.11	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
34.08/34.11	c limits/time = c 1791
34.08/34.11	c # frequency for displaying node information lines
34.08/34.11	c # [type: int, range: [-1,2147483647], default: 100]
34.08/34.11	c display/freq = c 10000
34.08/34.11	c -----------------------------------------------------------------------------------------------
34.08/34.11	c start solving problem
34.08/34.11	c 
124.82/124.95	c  time | node  | left  |LP iter| mem |mdpt |frac |vars |cons |ccons|cols |rows |cuts |confs|strbr|  dualbound   | primalbound  |  gap   
124.82/124.95	c   104s|     1 |     0 | 20343 | 707M|   0 |  11k|  11k| 110k| 110k|  11k| 110k|   0 |   0 |   0 | 1.000000e+01 |      --      |    Inf

Verifier Data 

ERROR: no interpretation found !

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-1869595-1245180249/watcher-1869595-1245180249 -o /tmp/evaluation-result-1869595-1245180249/solver-1869595-1245180249 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt-gcc42.clp -t 1800 -m 1800 -f HOME/instance-1869595-1245180249.opb 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 1.00 0.99 0.98 3/64 4314
/proc/meminfo: memFree=1793256/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=5812 CPUtime=0
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 524 0 0 0 0 0 0 0 18 0 1 0 185625717 5951488 509 1992294400 4194304 9342243 548682068736 18446744073709551615 8146941 0 0 4096 0 0 0 0 17 1 0 0
/proc/4314/statm: 1454 517 345 1256 0 193 0

[startup+0.0252879 s]
/proc/loadavg: 1.00 0.99 0.98 3/64 4314
/proc/meminfo: memFree=1793256/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=12260 CPUtime=0.01
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 2028 0 0 0 1 0 0 0 18 0 1 0 185625717 12554240 2012 1992294400 4194304 9342243 548682068736 18446744073709551615 8305584 0 0 4096 0 0 0 0 17 1 0 0
/proc/4314/statm: 3065 2012 378 1256 0 1804 0
Current children cumulated CPU time (s) 0.01
Current children cumulated vsize (KiB) 12260

[startup+0.102297 s]
/proc/loadavg: 1.00 0.99 0.98 3/64 4314
/proc/meminfo: memFree=1793256/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=20124 CPUtime=0.09
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 3993 0 0 0 8 1 0 0 18 0 1 0 185625717 20606976 3977 1992294400 4194304 9342243 548682068736 18446744073709551615 8305584 0 0 4096 0 0 0 0 17 1 0 0
/proc/4314/statm: 5031 3977 378 1256 0 3770 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 20124

[startup+0.301319 s]
/proc/loadavg: 1.00 0.99 0.98 3/64 4314
/proc/meminfo: memFree=1793256/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=24940 CPUtime=0.3
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 5221 0 0 0 28 2 0 0 19 0 1 0 185625717 25538560 5205 1992294400 4194304 9342243 548682068736 18446744073709551615 8305584 0 0 4096 0 0 0 0 17 1 0 0
/proc/4314/statm: 6235 5205 378 1256 0 4974 0
Current children cumulated CPU time (s) 0.3
Current children cumulated vsize (KiB) 24940

[startup+0.702366 s]
/proc/loadavg: 1.00 0.99 0.98 3/64 4314
/proc/meminfo: memFree=1793256/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=34212 CPUtime=0.7
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 7497 0 0 0 67 3 0 0 23 0 1 0 185625717 35033088 7481 1992294400 4194304 9342243 548682068736 18446744073709551615 8247732 0 0 4096 0 0 0 0 17 1 0 0
/proc/4314/statm: 8553 7481 378 1256 0 7292 0
Current children cumulated CPU time (s) 0.7
Current children cumulated vsize (KiB) 34212

[startup+1.50146 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=1757664/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=52892 CPUtime=1.49
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 12175 0 0 0 145 4 0 0 25 0 1 0 185625717 54161408 12159 1992294400 4194304 9342243 548682068736 18446744073709551615 8305584 0 0 4096 0 0 0 0 17 1 0 0
/proc/4314/statm: 13223 12159 378 1256 0 11962 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 52892

[startup+3.10165 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=1729952/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=90252 CPUtime=3.09
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 21499 0 0 0 300 9 0 0 25 0 1 0 185625717 92418048 21483 1992294400 4194304 9342243 548682068736 18446744073709551615 5542561 0 0 4096 0 0 0 0 17 1 0 0
/proc/4314/statm: 22563 21483 378 1256 0 21302 0
Current children cumulated CPU time (s) 3.09
Current children cumulated vsize (KiB) 90252

[startup+6.30202 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=1652768/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=167976 CPUtime=6.29
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 40855 0 0 0 610 19 0 0 25 0 1 0 185625717 172007424 40839 1992294400 4194304 9342243 548682068736 18446744073709551615 8247732 0 0 4096 0 0 0 0 17 1 0 0
/proc/4314/statm: 41994 40839 378 1256 0 40733 0
Current children cumulated CPU time (s) 6.29
Current children cumulated vsize (KiB) 167976

[startup+12.7018 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=1496096/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=320216 CPUtime=12.69
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 78872 0 0 0 1233 36 0 0 25 0 1 0 185625717 327901184 78856 1992294400 4194304 9342243 548682068736 18446744073709551615 5858006 0 0 4096 0 0 0 0 17 1 0 0
/proc/4314/statm: 80054 78866 378 1256 0 78793 0
Current children cumulated CPU time (s) 12.69
Current children cumulated vsize (KiB) 320216

[startup+25.5013 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=575136/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1239740 CPUtime=25.48
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 305231 0 0 0 2383 165 0 0 25 0 1 0 185625717 1269493760 304861 1992294400 4194304 9342243 548682068736 18446744073709551615 8300202 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 309935 304861 473 1256 0 308674 0
Current children cumulated CPU time (s) 25.48
Current children cumulated vsize (KiB) 1239740

[startup+51.1012 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523232/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=51.06
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323805 0 0 0 4853 253 0 0 25 0 1 0 185625717 1319116800 317554 1992294400 4194304 9342243 548682068736 18446744073709551615 6960298 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317554 616 1256 0 320789 0
Current children cumulated CPU time (s) 51.06
Current children cumulated vsize (KiB) 1288200

[startup+102.305 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523232/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=102.24
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323805 0 0 0 9969 255 0 0 25 0 1 0 185625717 1319116800 317554 1992294400 4194304 9342243 548682068736 18446744073709551615 6960579 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317554 616 1256 0 320789 0
Current children cumulated CPU time (s) 102.24
Current children cumulated vsize (KiB) 1288200

[startup+162.301 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523232/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=162.22
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 15966 256 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6975355 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 162.22
Current children cumulated vsize (KiB) 1288200

[startup+222.301 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523232/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=222.2
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 21963 257 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 8308455 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 222.2
Current children cumulated vsize (KiB) 1288200

[startup+282.301 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523232/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=282.19
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 27961 258 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6504849 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 282.19
Current children cumulated vsize (KiB) 1288200

[startup+342.301 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523168/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=342.16
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 33958 258 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 8308455 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 342.16
Current children cumulated vsize (KiB) 1288200

[startup+402.301 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523168/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=402.16
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 39956 260 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6962253 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 402.16
Current children cumulated vsize (KiB) 1288200

[startup+462.301 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523104/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=462.14
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 45953 261 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6978052 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 462.14
Current children cumulated vsize (KiB) 1288200

[startup+522.301 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523104/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=522.12
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 51950 262 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6962206 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 522.12
Current children cumulated vsize (KiB) 1288200

[startup+582.301 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523104/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=582.1
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 57947 263 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6964537 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 582.1
Current children cumulated vsize (KiB) 1288200

[startup+642.302 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=523040/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=642.09
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 63945 264 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6504801 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 642.09
Current children cumulated vsize (KiB) 1288200

[startup+702.302 s]

################
# More data... #
################

/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 105926 271 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6496599 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1061.97
Current children cumulated vsize (KiB) 1288200

[startup+1122.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=522912/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1121.96
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 111924 272 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6504812 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1121.96
Current children cumulated vsize (KiB) 1288200

[startup+1182.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=522912/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1181.94
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 117921 273 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6504812 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1181.94
Current children cumulated vsize (KiB) 1288200

[startup+1242.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=522848/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1241.93
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 123919 274 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6975329 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1241.93
Current children cumulated vsize (KiB) 1288200

[startup+1302.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=522848/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1301.91
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 129917 274 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6952941 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1301.91
Current children cumulated vsize (KiB) 1288200

[startup+1362.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=522848/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1361.89
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 135914 275 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6951757 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1361.89
Current children cumulated vsize (KiB) 1288200

[startup+1422.31 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=522784/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1421.89
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 141911 278 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6964488 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1421.89
Current children cumulated vsize (KiB) 1288200

[startup+1482.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=522784/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1481.86
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 147907 279 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6975333 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1481.86
Current children cumulated vsize (KiB) 1288200

[startup+1542.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=522720/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1541.85
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 153905 280 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6498454 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1541.85
Current children cumulated vsize (KiB) 1288200

[startup+1602.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=522720/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1601.83
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 159902 281 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6964103 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1601.83
Current children cumulated vsize (KiB) 1288200

[startup+1662.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4315
/proc/meminfo: memFree=522656/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1661.82
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 165899 283 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 8308455 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1661.82
Current children cumulated vsize (KiB) 1288200

[startup+1722.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4317
/proc/meminfo: memFree=522720/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1721.8
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323832 0 0 0 171896 284 0 0 25 0 1 0 185625717 1319116800 317581 1992294400 4194304 9342243 548682068736 18446744073709551615 6961991 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317581 643 1256 0 320789 0
Current children cumulated CPU time (s) 1721.8
Current children cumulated vsize (KiB) 1288200

[startup+1782.3 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4317
/proc/meminfo: memFree=522656/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1781.78
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323846 0 0 0 177890 288 0 0 25 0 1 0 185625717 1319116800 317595 1992294400 4194304 9342243 548682068736 18446744073709551615 4338420 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317595 652 1256 0 320789 0
Current children cumulated CPU time (s) 1781.78
Current children cumulated vsize (KiB) 1288200



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1800.6 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4317
/proc/meminfo: memFree=522656/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1800.09
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323849 0 0 0 179720 289 0 0 25 0 1 0 185625717 1319116800 317598 1992294400 4194304 9342243 548682068736 18446744073709551615 5573017 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317598 655 1256 0 320789 0
Current children cumulated CPU time (s) 1800.09
Current children cumulated vsize (KiB) 1288200

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Sending SIGKILL to process tree (bottom up)

Sending SIGKILL to -4314

Solver just ended. Dumping a history of the last processes samples

[startup+1801.4 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4317
/proc/meminfo: memFree=522656/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1800.88
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323860 0 0 0 179799 289 0 0 25 0 1 0 185625717 1319116800 317609 1992294400 4194304 9342243 548682068736 18446744073709551615 6960221 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317609 666 1256 0 320789 0
Current children cumulated CPU time (s) 1800.88
Current children cumulated vsize (KiB) 1288200

[startup+1802.2 s]
/proc/loadavg: 1.00 0.99 0.98 2/66 4318
/proc/meminfo: memFree=522648/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1801.68
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323860 0 0 0 179879 289 0 0 25 0 1 0 185625717 1319116800 317609 1992294400 4194304 9342243 548682068736 18446744073709551615 6960255 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317609 666 1256 0 320789 0
Current children cumulated CPU time (s) 1801.68
Current children cumulated vsize (KiB) 1288200

[startup+1802.6 s]
/proc/loadavg: 1.00 0.99 0.98 2/66 4318
/proc/meminfo: memFree=522648/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=1288200 CPUtime=1802.08
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4194304 323860 0 0 0 179919 289 0 0 25 0 1 0 185625717 1319116800 317609 1992294400 4194304 9342243 548682068736 18446744073709551615 6960609 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 322050 317609 666 1256 0 320789 0
Current children cumulated CPU time (s) 1802.08
Current children cumulated vsize (KiB) 1288200

[startup+1802.8 s]
/proc/loadavg: 1.00 0.99 0.98 2/65 4318
/proc/meminfo: memFree=1750560/2055920 swapFree=4192812/4192956
[pid=4314] ppid=4312 vsize=0 CPUtime=1802.28
/proc/4314/stat : 4314 (pbscip.linux.x8) R 4312 4314 4010 0 -1 4195332 323860 0 0 0 179920 308 0 0 25 0 1 0 185625717 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 0 0 0 17 1 0 0
/proc/4314/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1802.28
Current children cumulated vsize (KiB) 0

Child ended because it received signal 9 (SIGKILL)
Real time (s): 1802.81
CPU time (s): 1802.29
CPU user time (s): 1799.2
CPU system time (s): 3.09153
CPU usage (%): 99.9714
Max. virtual memory (cumulated for all children) (KiB): 1308276

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1799.2
system time used= 3.09153
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 323860
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2
involuntary context switches= 3204

runsolver used 1.62875 second user time and 3.98839 second system time

The end

Launcher Data 

Begin job on node11 at 2009-06-16 21:24:11
IDJOB=1869595
IDBENCH=2952
IDSOLVER=684
FILE ID=node11/1869595-1245180249
PBS_JOBID= 9363930
Free space on /tmp= 66156 MiB

SOLVER NAME= SCIPclp SCIP 1.1.0.7 with CLP 1.8.2
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.11.opb
COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt-gcc42.clp -t TIMEOUT -m MEMLIMIT -f BENCHNAME
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-1869595-1245180249/watcher-1869595-1245180249 -o /tmp/evaluation-result-1869595-1245180249/solver-1869595-1245180249 -C 1800 -W 2000 -M 1800  HOME/pbscip.linux.x86_64.gnu.opt-gcc42.clp -t 1800 -m 1800 -f HOME/instance-1869595-1245180249.opb

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= 5f844d3fbd9d157e56bab6c09ee5f179
RANDOM SEED=2124385754

node11.alineos.net Linux 2.6.9-22.EL.rootsmp #1 SMP Mon Oct 3 08:59:52 CEST 2005

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.234
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5914.62
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.234
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5586.94
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2055920 kB
MemFree:       1793736 kB
Buffers:         46212 kB
Cached:         143100 kB
SwapCached:          0 kB
Active:         110620 kB
Inactive:        92128 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2055920 kB
LowFree:       1793736 kB
SwapTotal:     4192956 kB
SwapFree:      4192812 kB
Dirty:           54640 kB
Writeback:           0 kB
Mapped:          23244 kB
Slab:            45448 kB
Committed_AS:   185000 kB
PageTables:       1452 kB
VmallocTotal: 536870911 kB
VmallocUsed:    264952 kB
VmallocChunk: 536605679 kB
HugePages_Total:     0
HugePages_Free:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 66144 MiB
End job on node11 at 2009-06-16 21:54:14