Trace number 1869594

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjCPU timeWall clock time
SCIPspx SCIP 1.1.0.7 with SoPLEX 1.4.1(24.4.2009)? (TO) 1802.28 1802.71

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-nonunif-100_100.11.opb
MD5SUM5f844d3fbd9d157e56bab6c09ee5f179
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkOPT
Best value of the objective obtained on this benchmark38
Best CPU time to get the best result obtained on this benchmark255.704
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 38
Optimality of the best value was proved YES
Number of variables21675
Total number of constraints1210400
Number of constraints which are clauses1206830
Number of constraints which are cardinality constraints (but not clauses)3570
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint170
Number of terms in the objective function 170
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 170
Number of bits of the sum of numbers in the objective function 8
Biggest number in a constraint 168
Number of bits of the biggest number in a constraint 8
Biggest sum of numbers in a constraint 338
Number of bits of the biggest sum of numbers9
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Solver Data 

18.29/18.34	c SCIP version 1.1.0.7
18.29/18.34	c LP-Solver SoPlex 1.4.1
18.29/18.34	c user parameter file <scip.set> not found - using default parameters
18.29/18.34	c read problem <HOME/instance-1869594-1245180225.opb>
18.29/18.34	c original problem has 21675 variables (21675 bin, 0 int, 0 impl, 0 cont) and 1210400 constraints
21.58/21.67	c start presolving problem
21.58/21.67	c presolving:
31.28/31.35	c (round 1) 10229 del vars, 1090739 del conss, 9827 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2971827 impls, 0 clqs
31.48/31.52	c (round 2) 10233 del vars, 1099536 del conss, 9827 chg bounds, 162 chg sides, 324 chg coeffs, 0 upgd conss, 2971827 impls, 0 clqs
32.68/32.79	c (round 3) 10233 del vars, 1099536 del conss, 9827 chg bounds, 162 chg sides, 324 chg coeffs, 110864 upgd conss, 2971827 impls, 0 clqs
33.99/34.02	c    (13.7s) probing: 161/11442 (1.4%) - 0 fixings, 0 aggregations, 6 implications, 0 bound changes
33.99/34.02	c    (13.7s) probing aborted: 100/100 successive totally useless probings
33.99/34.02	c presolving (4 rounds):
33.99/34.02	c  10233 deleted vars, 1099536 deleted constraints, 9827 tightened bounds, 0 added holes, 162 changed sides, 324 changed coefficients
33.99/34.02	c  2971839 implications, 0 cliques
33.99/34.02	c presolved problem has 11442 variables (11442 bin, 0 int, 0 impl, 0 cont) and 110864 constraints
33.99/34.02	c  110864 constraints of type <logicor>
33.99/34.02	c transformed objective value is always integral (scale: 1)
33.99/34.02	c Presolving Time: 11.12
33.99/34.03	c strange?!, PURESAT with obj
33.99/34.03	c -----------------------------------------------------------------------------------------------
33.99/34.03	c # maximal memory usage in MB; reported memory usage is lower than real memory usage!
33.99/34.03	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
33.99/34.03	c limits/memory = c 1620
33.99/34.03	c # maximal time in seconds to run
33.99/34.03	c # [type: real, range: [0,1.79769313486232e+308], default: 1e+20]
33.99/34.03	c limits/time = c 1791
33.99/34.03	c # frequency for displaying node information lines
33.99/34.03	c # [type: int, range: [-1,2147483647], default: 100]
33.99/34.03	c display/freq = c 10000
33.99/34.03	c -----------------------------------------------------------------------------------------------
33.99/34.03	c start solving problem
33.99/34.03	c 
284.72/284.80	c  time | node  | left  |LP iter| mem |mdpt |frac |vars |cons |ccons|cols |rows |cuts |confs|strbr|  dualbound   | primalbound  |  gap   
284.72/284.80	c   264s|     1 |     0 | 25602 | 707M|   0 |9823 |  11k| 110k| 110k|  11k| 110k|   0 |   0 |   0 | 1.000000e+01 |      --      |    Inf

Verifier Data 

ERROR: no interpretation found !

Watcher Data 

runsolver version 3.2.9 (svn:492) (c) roussel@cril.univ-artois.fr

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-1869594-1245180225/watcher-1869594-1245180225 -o /tmp/evaluation-result-1869594-1245180225/solver-1869594-1245180225 -C 1800 -W 2000 -M 1800 HOME/pbscip.linux.x86_64.gnu.opt-gcc42.spx -t 1800 -m 1800 -f HOME/instance-1869594-1245180225.opb 

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 2000 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 1843200 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 1894400 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 0.85 0.97 0.99 3/64 1675
/proc/meminfo: memFree=1798512/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=4328 CPUtime=0
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 486 0 0 0 0 0 0 0 18 0 1 0 185623724 4431872 470 1992294400 4194304 7823515 548682068736 18446744073709551615 6883856 0 0 4096 0 0 0 0 17 1 0 0
/proc/1675/statm: 1162 482 315 886 0 272 0

[startup+0.043733 s]
/proc/loadavg: 0.85 0.97 0.99 3/64 1675
/proc/meminfo: memFree=1798512/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=13940 CPUtime=0.03
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 2567 0 0 0 2 1 0 0 18 0 1 0 185623724 14274560 2549 1992294400 4194304 7823515 548682068736 18446744073709551615 5878822 0 0 4096 0 0 0 0 17 1 0 0
/proc/1675/statm: 3485 2559 354 886 0 2595 0
Current children cumulated CPU time (s) 0.03
Current children cumulated vsize (KiB) 13940

[startup+0.101736 s]
/proc/loadavg: 0.85 0.97 0.99 3/64 1675
/proc/meminfo: memFree=1798512/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=18504 CPUtime=0.09
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 3953 0 0 0 8 1 0 0 18 0 1 0 185623724 18948096 3935 1992294400 4194304 7823515 548682068736 18446744073709551615 6957168 0 0 4096 0 0 0 0 17 1 0 0
/proc/1675/statm: 4626 3935 354 886 0 3736 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 18504

[startup+0.301752 s]
/proc/loadavg: 0.85 0.97 0.99 3/64 1675
/proc/meminfo: memFree=1798512/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=23324 CPUtime=0.29
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 5153 0 0 0 27 2 0 0 19 0 1 0 185623724 23883776 5135 1992294400 4194304 7823515 548682068736 18446744073709551615 6908057 0 0 4096 0 0 0 0 17 1 0 0
/proc/1675/statm: 5831 5135 354 886 0 4941 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 23324

[startup+0.701785 s]
/proc/loadavg: 0.85 0.97 0.99 3/64 1675
/proc/meminfo: memFree=1798512/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=32744 CPUtime=0.69
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 7468 0 0 0 66 3 0 0 22 0 1 0 185623724 33529856 7450 1992294400 4194304 7823515 548682068736 18446744073709551615 5878822 0 0 4096 0 0 0 0 17 1 0 0
/proc/1675/statm: 8186 7458 354 886 0 7296 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 32744

[startup+1.50185 s]
/proc/loadavg: 0.85 0.97 0.99 2/65 1676
/proc/meminfo: memFree=1762856/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=52456 CPUtime=1.49
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 12399 0 0 0 143 6 0 0 25 0 1 0 185623724 53714944 12381 1992294400 4194304 7823515 548682068736 18446744073709551615 6957168 0 0 4096 0 0 0 0 17 1 0 0
/proc/1675/statm: 13114 12381 354 886 0 12224 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 52456

[startup+3.10198 s]
/proc/loadavg: 0.86 0.97 0.99 2/65 1676
/proc/meminfo: memFree=1737128/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=88844 CPUtime=3.09
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 21466 0 0 0 298 11 0 0 25 0 1 0 185623724 90976256 21448 1992294400 4194304 7823515 548682068736 18446744073709551615 4511625 0 0 4096 0 0 0 0 17 1 0 0
/proc/1675/statm: 22211 21448 354 886 0 21321 0
Current children cumulated CPU time (s) 3.09
Current children cumulated vsize (KiB) 88844

[startup+6.30124 s]
/proc/loadavg: 0.86 0.97 0.99 2/65 1676
/proc/meminfo: memFree=1657768/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=166440 CPUtime=6.29
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 40821 0 0 0 608 21 0 0 25 0 1 0 185623724 170434560 40803 1992294400 4194304 7823515 548682068736 18446744073709551615 6957168 0 0 4096 0 0 0 0 17 1 0 0
/proc/1675/statm: 41610 40803 354 886 0 40720 0
Current children cumulated CPU time (s) 6.29
Current children cumulated vsize (KiB) 166440

[startup+12.7018 s]
/proc/loadavg: 0.88 0.97 0.99 2/65 1676
/proc/meminfo: memFree=1500264/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=319984 CPUtime=12.68
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 78981 0 0 0 1231 37 0 0 25 0 1 0 185623724 327663616 78963 1992294400 4194304 7823515 548682068736 18446744073709551615 4511625 0 0 4096 0 0 0 0 17 1 0 0
/proc/1675/statm: 79996 78963 354 886 0 79106 0
Current children cumulated CPU time (s) 12.68
Current children cumulated vsize (KiB) 319984

[startup+25.5018 s]
/proc/loadavg: 0.90 0.97 0.99 2/65 1676
/proc/meminfo: memFree=580200/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1238668 CPUtime=25.49
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 305231 0 0 0 2380 169 0 0 25 0 1 0 185623724 1268396032 304859 1992294400 4194304 7823515 548682068736 18446744073709551615 5802288 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 309667 304859 431 886 0 308777 0
Current children cumulated CPU time (s) 25.49
Current children cumulated vsize (KiB) 1238668

[startup+51.1019 s]
/proc/loadavg: 0.93 0.97 0.99 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=51.08
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323518 0 0 0 4854 254 0 0 25 0 1 0 185623724 1317117952 317264 1992294400 4194304 7823515 548682068736 18446744073709551615 6234692 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317264 520 886 0 320672 0
Current children cumulated CPU time (s) 51.08
Current children cumulated vsize (KiB) 1286248

[startup+102.305 s]
/proc/loadavg: 0.97 0.97 0.99 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=102.27
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323518 0 0 0 9968 259 0 0 25 0 1 0 185623724 1317117952 317264 1992294400 4194304 7823515 548682068736 18446744073709551615 6212302 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317264 520 886 0 320672 0
Current children cumulated CPU time (s) 102.27
Current children cumulated vsize (KiB) 1286248

[startup+162.302 s]
/proc/loadavg: 1.07 0.99 0.99 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=162.25
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323518 0 0 0 15964 261 0 0 25 0 1 0 185623724 1317117952 317264 1992294400 4194304 7823515 548682068736 18446744073709551615 6908067 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317264 520 886 0 320672 0
Current children cumulated CPU time (s) 162.25
Current children cumulated vsize (KiB) 1286248

[startup+222.302 s]
/proc/loadavg: 1.10 1.00 1.00 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=222.24
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323518 0 0 0 21959 265 0 0 25 0 1 0 185623724 1317117952 317264 1992294400 4194304 7823515 548682068736 18446744073709551615 6212774 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317264 520 886 0 320672 0
Current children cumulated CPU time (s) 222.24
Current children cumulated vsize (KiB) 1286248

[startup+282.302 s]
/proc/loadavg: 1.04 1.00 1.00 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=282.22
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323518 0 0 0 27955 267 0 0 25 0 1 0 185623724 1317117952 317264 1992294400 4194304 7823515 548682068736 18446744073709551615 6212306 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317264 520 886 0 320672 0
Current children cumulated CPU time (s) 282.22
Current children cumulated vsize (KiB) 1286248

[startup+342.302 s]
/proc/loadavg: 1.01 1.00 1.00 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=342.21
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 33952 269 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6208892 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 342.21
Current children cumulated vsize (KiB) 1286248

[startup+402.302 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=402.19
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 39949 270 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6208789 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 402.19
Current children cumulated vsize (KiB) 1286248

[startup+462.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=462.18
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 45947 271 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6208329 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 462.18
Current children cumulated vsize (KiB) 1286248

[startup+522.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=522.17
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 51945 272 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6217443 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 522.17
Current children cumulated vsize (KiB) 1286248

[startup+582.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=582.15
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 57942 273 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6208537 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 582.15
Current children cumulated vsize (KiB) 1286248

[startup+642.301 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1676
/proc/meminfo: memFree=529064/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=642.15
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 63941 274 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6208337 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 642.15
Current children cumulated vsize (KiB) 1286248

[startup+702.301 s]

################
# More data... #
################

/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 105921 283 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 5914500 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 1062.04
Current children cumulated vsize (KiB) 1286248

[startup+1122.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1676
/proc/meminfo: memFree=528936/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1122.03
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 111919 284 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6019534 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 1122.03
Current children cumulated vsize (KiB) 1286248

[startup+1182.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1676
/proc/meminfo: memFree=528936/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1182.01
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 117916 285 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 1182.01
Current children cumulated vsize (KiB) 1286248

[startup+1242.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1676
/proc/meminfo: memFree=528936/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1242
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 123913 287 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6208526 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 1242
Current children cumulated vsize (KiB) 1286248

[startup+1302.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1676
/proc/meminfo: memFree=528872/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1301.99
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 129911 288 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6208789 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 1301.99
Current children cumulated vsize (KiB) 1286248

[startup+1362.3 s]
/proc/loadavg: 1.04 1.01 1.00 2/65 1676
/proc/meminfo: memFree=528872/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1361.97
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 135908 289 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6208558 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 1361.97
Current children cumulated vsize (KiB) 1286248

[startup+1422.31 s]
/proc/loadavg: 1.09 1.04 1.01 2/65 1676
/proc/meminfo: memFree=528872/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1421.96
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 141905 291 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6177706 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 1421.96
Current children cumulated vsize (KiB) 1286248

[startup+1482.3 s]
/proc/loadavg: 1.03 1.03 1.00 2/65 1676
/proc/meminfo: memFree=528872/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1481.95
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323529 0 0 0 147902 293 0 0 25 0 1 0 185623724 1317117952 317275 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317275 531 886 0 320672 0
Current children cumulated CPU time (s) 1481.95
Current children cumulated vsize (KiB) 1286248

[startup+1542.3 s]
/proc/loadavg: 1.01 1.02 1.00 2/65 1676
/proc/meminfo: memFree=528872/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1541.93
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323542 0 0 0 153899 294 0 0 25 0 1 0 185623724 1317117952 317288 1992294400 4194304 7823515 548682068736 18446744073709551615 5597699 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317288 544 886 0 320672 0
Current children cumulated CPU time (s) 1541.93
Current children cumulated vsize (KiB) 1286248

[startup+1602.3 s]
/proc/loadavg: 1.00 1.02 1.00 2/65 1676
/proc/meminfo: memFree=528808/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1601.91
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323561 0 0 0 159839 352 0 0 25 0 1 0 185623724 1317117952 317307 1992294400 4194304 7823515 548682068736 18446744073709551615 6212418 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317307 560 886 0 320672 0
Current children cumulated CPU time (s) 1601.91
Current children cumulated vsize (KiB) 1286248

[startup+1662.3 s]
/proc/loadavg: 1.00 1.01 1.00 2/65 1678
/proc/meminfo: memFree=528616/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1661.9
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323561 0 0 0 165835 355 0 0 25 0 1 0 185623724 1317117952 317307 1992294400 4194304 7823515 548682068736 18446744073709551615 6908067 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317307 560 886 0 320672 0
Current children cumulated CPU time (s) 1661.9
Current children cumulated vsize (KiB) 1286248

[startup+1722.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1678
/proc/meminfo: memFree=528616/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1721.89
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323561 0 0 0 171832 357 0 0 25 0 1 0 185623724 1317117952 317307 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317307 560 886 0 320672 0
Current children cumulated CPU time (s) 1721.89
Current children cumulated vsize (KiB) 1286248

[startup+1782.3 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1678
/proc/meminfo: memFree=528616/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1781.87
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323561 0 0 0 177828 359 0 0 25 0 1 0 185623724 1317117952 317307 1992294400 4194304 7823515 548682068736 18446744073709551615 6212422 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317307 560 886 0 320672 0
Current children cumulated CPU time (s) 1781.87
Current children cumulated vsize (KiB) 1286248



Maximum CPU time exceeded: sending SIGTERM then SIGKILL

[startup+1800.5 s]
/proc/loadavg: 1.00 1.00 1.00 2/65 1678
/proc/meminfo: memFree=528616/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1800.08
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323561 0 0 0 179648 360 0 0 25 0 1 0 185623724 1317117952 317307 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317307 560 886 0 320672 0
Current children cumulated CPU time (s) 1800.08
Current children cumulated vsize (KiB) 1286248

Sending SIGTERM to process tree (bottom up)
Sleeping 2 seconds

Sending SIGKILL to process tree (bottom up)

Sending SIGKILL to -1675

Solver just ended. Dumping a history of the last processes samples

[startup+1801.4 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 1679
/proc/meminfo: memFree=528608/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1800.97
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323561 0 0 0 179737 360 0 0 25 0 1 0 185623724 1317117952 317307 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317307 560 886 0 320672 0
Current children cumulated CPU time (s) 1800.97
Current children cumulated vsize (KiB) 1286248

[startup+1802.2 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 1679
/proc/meminfo: memFree=528608/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=1286248 CPUtime=1801.77
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4194304 323561 0 0 0 179817 360 0 0 25 0 1 0 185623724 1317117952 317307 1992294400 4194304 7823515 548682068736 18446744073709551615 6954986 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 321562 317307 560 886 0 320672 0
Current children cumulated CPU time (s) 1801.77
Current children cumulated vsize (KiB) 1286248

[startup+1802.6 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 1679
/proc/meminfo: memFree=528608/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=0 CPUtime=1802.17
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4195332 323561 0 0 0 179848 369 0 0 25 0 1 0 185623724 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1802.17
Current children cumulated vsize (KiB) 0

[startup+1802.7 s]
/proc/loadavg: 1.00 1.00 1.00 2/66 1679
/proc/meminfo: memFree=528608/2055920 swapFree=4191900/4192956
[pid=1675] ppid=1673 vsize=0 CPUtime=1802.27
/proc/1675/stat : 1675 (pbscip.linux.x8) R 1673 1675 1634 0 -1 4195332 323561 0 0 0 179848 379 0 0 25 0 1 0 185623724 0 0 1992294400 0 0 0 0 0 0 0 4096 16384 0 0 0 17 1 0 0
/proc/1675/statm: 0 0 0 0 0 0 0
Current children cumulated CPU time (s) 1802.27
Current children cumulated vsize (KiB) 0

Child ended because it received signal 9 (SIGKILL)
Real time (s): 1802.71
CPU time (s): 1802.28
CPU user time (s): 1798.48
CPU system time (s): 3.79942
CPU usage (%): 99.9766
Max. virtual memory (cumulated for all children) (KiB): 1307052

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1798.48
system time used= 3.79942
maximum resident set size= 0
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 323561
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 2
involuntary context switches= 1360

runsolver used 1.59576 second user time and 4.02939 second system time

The end

Launcher Data 

Begin job on node3 at 2009-06-16 21:23:47
IDJOB=1869594
IDBENCH=2952
IDSOLVER=683
FILE ID=node3/1869594-1245180225
PBS_JOBID= 9368279
Free space on /tmp= 66276 MiB

SOLVER NAME= SCIPspx SCIP 1.1.0.7 with SoPLEX 1.4.1(24.4.2009)
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-nonunif-100_100.11.opb
COMMAND LINE= HOME/pbscip.linux.x86_64.gnu.opt-gcc42.spx -t TIMEOUT -m MEMLIMIT -f BENCHNAME
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-1869594-1245180225/watcher-1869594-1245180225 -o /tmp/evaluation-result-1869594-1245180225/solver-1869594-1245180225 -C 1800 -W 2000 -M 1800  HOME/pbscip.linux.x86_64.gnu.opt-gcc42.spx -t 1800 -m 1800 -f HOME/instance-1869594-1245180225.opb

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 1800 MiB
MAX NB THREAD= 0

MD5SUM BENCH= 5f844d3fbd9d157e56bab6c09ee5f179
RANDOM SEED=1432483

node3.alineos.net Linux 2.6.9-22.EL.rootsmp #1 SMP Mon Oct 3 08:59:52 CEST 2005

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.236
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5914.62
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 15
model		: 4
model name	:                   Intel(R) Xeon(TM) CPU 3.00GHz
stepping	: 3
cpu MHz		: 3000.236
cache size	: 2048 KB
fpu		: yes
fpu_exception	: yes
cpuid level	: 5
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx lm pni monitor ds_cpl cid cx16 xtpr
bogomips	: 5586.94
clflush size	: 64
cache_alignment	: 128
address sizes	: 36 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:      2055920 kB
MemFree:       1798992 kB
Buffers:         43080 kB
Cached:         142232 kB
SwapCached:        260 kB
Active:          91284 kB
Inactive:       107176 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      2055920 kB
LowFree:       1798992 kB
SwapTotal:     4192956 kB
SwapFree:      4191900 kB
Dirty:           53036 kB
Writeback:           0 kB
Mapped:          21660 kB
Slab:            44532 kB
Committed_AS:   155248 kB
PageTables:       1376 kB
VmallocTotal: 536870911 kB
VmallocUsed:    264952 kB
VmallocChunk: 536605679 kB
HugePages_Total:     0
HugePages_Free:      0
Hugepagesize:     2048 kB

Free space on /tmp at the end= 66268 MiB
End job on node3 at 2009-06-16 21:53:50